Query= MSMg01no299_j19.b1 MSMg01no299_j19.b1 CHROMAT_FILE:
MSMg01no299_j19.b1 PHD_FILE: MSMg01no299_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:35 2005
(320 letters)
>mm_chr13_61111101_61111819
Length = 719
Score = 580 bits (300), Expect = e-170
Identities = 312/318 (98%), Gaps = 5/318 (1%)
Strand = Plus / Plus
Query: 5 gaattcattgagaaggagagaatgacagaaagtcctttctgctcttcacctgtggaagct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgagaaggagagaatgacagaaagtcctttctgctcttcacctgtggaagct 264
Query: 65 tttcacggtaaagcacacaaacctccaactaagcctagaagacagagtttacactgtagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttcacggtaaagcacacaaacctccaactaagcctagaagacagagtttacactgtagt 324
Query: 125 cttagtttgcttgctgacctctaagatgtctgttctttatttctcccttccaaatgtatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttagtttgcttgctgacctctaagatgtctgttctttatttctcccttccaaatgtatt 384
Query: 185 ggcccattcttcagtctctaacatatacctctaagaccctcctttggaagaatatgtgat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcccattcttcagtctctaacatatacctctaagaccctcctttggaagaatatgtgat 444
Query: 245 ctgtgagagaaaaatgatcagaatgcataaaggcatctttag--tgattttgcattaggc 302
||||||||||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct: 445 ctgtgagagaaaaatgatcagaatgcataaaggcacc---agagtgattttgcattaggc 501
Query: 303 aagtacagtgaactctag 320
||||||||||||||||||
Sbjct: 502 aagtacagtgaactctag 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space: 220810
Effective search space used: 220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_j19.g1 MSMg01no299_j19.g1 CHROMAT_FILE:
MSMg01no299_j19.g1 PHD_FILE: MSMg01no299_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:35 2005
(287 letters)
>mm_chr13_61273626_61274312
Length = 687
Score = 538 bits (278), Expect = e-157
Identities = 284/286 (99%)
Strand = Plus / Minus
Query: 1 aactccaatatgacaacttagaaatattttacagtaattttgctcctggtttataagctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aactccaatatgacaacttagaaatattttacagtaattttgctcctggtttataagctt 427
Query: 61 taaatggtactggctgtataccttgttaacccaagactggcttctatccagctatcagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 taaatggtactggctgtataccttgttaacccaagactggcttctatccagctatcagtt 367
Query: 121 actgcagctttcaatcttgaatgtattctgttttgttggcttctgaaacagacctgacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 actgcagctttcaatcttgaatgtattctgttttgttggcttctgaaacagacctgacca 307
Query: 181 ataaggactttttctttgcaagacaccttaactgaaaaacagagaaaaaaggctttcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ataaggactttttctttgcaagacaccttaactgaaaaacagagaaaaaaggctttcatg 247
Query: 241 aaatcataatttgttttgcttctcacaaatacctaaacacaattga 286
|| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aagtcaaaatttgttttgcttctcacaaatacctaaacacaattga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
