Query= MSMg01no299_m07.b1 MSMg01no299_m07.b1 CHROMAT_FILE:
MSMg01no299_m07.b1 PHD_FILE: MSMg01no299_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:47 2005
(551 letters)
>mm_chr13_59707440_59708392
Length = 953
Score = 996 bits (515), Expect = 0.0
Identities = 541/551 (98%), Gaps = 6/551 (1%)
Strand = Plus / Plus
Query: 5 gaattctaagccaatcacggctacatagtgtgttatgcctgcccacaccagcatcaatct 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaagccaaccagggctacatagtgtgttatgcctgcccacaccagcatcaatct 264
Query: 65 cttgaggtggggggagtggagaaatacgggacagttgtgccaagtgcatctggccaacta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttgaggtggggggagtggagaaatacgggacagttgtgccaagtgcatctggccaacta 324
Query: 125 gagagagctatgaaggtgtgagaagtgattgggctaaacttggaagtcagcatgcaggtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagagagctatgaaggtgtgagaagtgattgggctaaacttggaagtcagcatgcaggtt 384
Query: 185 gtcgtgtgcatatgatggggaggtggaggtaggagacctgcctggtaaatgttaggcaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtcgtgtgcatatgatggggaggtggaggtaggagacctgcctggtaaatgttaggcaag 444
Query: 245 tgagcatcaggggttctttctaaacatctgtgaagcttggggagtggagaggcatggaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgagcatcaggggttctttctaaacatctgtgaagcttggggagtggagaggcatggaaa 504
Query: 305 ggtagag--ggcggacactgaacctggaggagaaactgacctgtcacgtgcgtcatacac 362
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggtagagagggcggacagtgaacctggaggagaaactgacctgtcacgtgcgtcatacac 564
Query: 363 tacccagtttcaccca-a-cacgagcgtgggttgggctttttctttccctcctgatgtag 420
|||||||||| || | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tacccagttttac--agagcacgagcgtgggttgggctttttctttccctcctgatgtag 622
Query: 421 tgttctcttctttctctggggtacgctagctgacctgacttcagtgcacattgtttttac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgttctcttctttctctggggtacgctagctgacctgacttcagtgcacattgtttttac 682
Query: 481 taagtatcccagaattctgctgtgggaataattatctttgtaactacgcgtcactcaggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 taagtatcccagaattctgctgtgggaataattatctttgtaactacgcgtcactcaggc 742
Query: 541 ttctctatata 551
|||||||||||
Sbjct: 743 ttctctatata 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 953
Length adjustment: 10
Effective length of query: 541
Effective length of database: 943
Effective search space: 510163
Effective search space used: 510163
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_m07.g1 MSMg01no299_m07.g1 CHROMAT_FILE:
MSMg01no299_m07.g1 PHD_FILE: MSMg01no299_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:47 2005
(662 letters)
>mm_chr13_59857724_59858785
Length = 1062
Score = 1247 bits (645), Expect = 0.0
Identities = 657/661 (99%)
Strand = Plus / Minus
Query: 1 ccacatatcaaagggtctccactgttatgtatagagttggttggatgcagactggactaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ccacatatcaaagggtctccactgttatgtatagagttggttggatgcagactggactaa 802
Query: 61 caggaagctatgcactccccccacccccaaaaggaagtccagggtcactcatcagctgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caggaagctatgcactccccccacccccaaaaggaagtccagggtcactcatcagctgta 742
Query: 121 gggtggctgacaatgaccactagaaactctggacttctggactgcgatcccacgctctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gggtggctgacaatgaccactagaaactctggacttctggactgcgatcccacgctctgc 682
Query: 181 acgctgcggcctttgtgacatgtgtttccttttccccaaggagtccgagtgttcatcgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acgctgcggcctttgtgacatgtgtttccttttccccaaggagtccgagtgttcatcgag 622
Query: 241 aagaaagcacagctaaccctgttaggaacagagatggactatgtggaagacaaactgtcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagaaagcacagctaaccctgttaggaacagagatggactatgtggaagacaaactgtcc 562
Query: 301 agtgagtttgtgttcaataaccccaacatcaagggaacctgtgcctgcggtgagagcttt 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 agtgagtttgtgttcaataaccccaacatcaagggaacctgtggctgcggtgagagcttt 502
Query: 361 cacgtgtgaaacctcaggactgtgagctccaggagagccgggtctgcctcggcgcttcct 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 cacgtgtgaaacctcaggactgtgagctccaggtgagccgggtctgcctcggcgcttcct 442
Query: 421 gaagaaatcatgtgatggcacgtgctcagacgtgtggctgcctgcctcgtgggtgaaaat 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 gaagaaatcatgtgatggcacgtgctcaggcgtgtggctgcctgcctcgtgggtgaaaat 382
Query: 481 aaagtgacgcatttgaaaaccaagccaatgtgggaagagttccaaaagcaatgtctgtac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtgacgcatttgaaaaccaagccaatgtgggaagagttccaaaagcaatgtctgtac 322
Query: 541 tctctgtaagacacaaactgagaaaacatggcgtctatactctcaaagacacaaactgag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctgtaagacacaaactgagaaaacatggcgtctatactctcaaagacacaaactgag 262
Query: 601 aaaacatggcgtctgtactaagacacaactgagaagccgtagatttccttgagtcattct 660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacatggcgtctatactaagacacaactgagaagccgtagatttccttgagtcattct 202
Query: 661 g 661
|
Sbjct: 201 g 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
