BAC Information

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BAC

Clone NameMSMg01-299O09
Chromosome13 (Build37)
Map Location 75,690,253 - 75,690,720
singlet/doubletsinglet
Overlap genenone
Upstream geneArts1, Cast, LOC622204, EG544954, Pcsk1, LOC672443, LOC666764, LOC100042606
Downstream geneLOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, Mctp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299O09.T7 (MSMg01no299_o09.b1)MSMg01-299O09.TJ (MSMg01no299_o09.g1)
ACCAG426542AG426543
length723699
length of high quality
(start - end)		531 (45 - 575)243 (55 - 297)
definitionCHROMAT_FILE: MSMg01no299_o09.b1 PHD_FILE: MSMg01no299_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:57 2005CHROMAT_FILE: MSMg01no299_o09.g1 PHD_FILE: MSMg01no299_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACAAATTACCCTGTTGGTACATTTGTAGTCTCAGATAAAGCACCA
GTCAGAAGACCTCAGCTCATCTTGACCTTGTACATGAAGGTGAAATGCCT
GTGTTCTCTGGGCACTATAACTGAGTGAGTTGGTTAGCCTTGTTCTTCTA
AACTTGTTTCAAATAACTTGTTAAAGAATACGAAGTGTTGTTATTACTTA
AACTAAATTAACTAAACTAATATAGATGTTAAGATGTTCATATAGACATA
TTTGGTTATGGTATGTATTTCATTTTAATAAGCATTTTTACTGCTTTGTT
AAAAACTGGTCAGGCGAAAATTACATCTGAATCTATTGATAGGGAGAAAT
GGATACTAGACTACCTAACATTTCTTTTTTGTGGAGTGTAGACTGACTTG
TTCAGCAGTTCTATGACTGTTACAATACTCTAATACTCAAGTGCTGGTGA
GGAATGATATATTAATTATATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATATATCTCCCTCTCTCGCGCGTGTGT
GCATTTGTATGTATATATACAGAGACATAGTGAGTGTTTTCCCATTAATA
AAAAAAAAAAATTGAAGTGTTGTTCTTTCTCTCCCTATATATATACATAT
ATATATATATAGATCTTGCGCTT

GGCGGCCGCCTTTTTCCTACTGGAGGTGAACTATAGAAGTAACAAAAAAA
TTCAGGGATAACTAGTAACTGCCTAATAACTATGGGCAACTAAAGAATGC
CGCAAGCAGGAAAAAGAGCACAACAATTGGTTATCCAATTCCAAATGGTC
AGCTGTGAAAACATACATAAATGTAACATTTTACAAACTGAGTAGGTTTA
TTATTTCATTTAGAAATAAATGTATATATGTATACACATATATGCAAATA
ACAGCAATTAATAAATAAAAGGTCATAAATTTGAAAGGGAGCAAGTANGT
ACACGGAAGGTTTTGGAGGGAGAAAAGGGAAGTGTGTAATGATGTAACCC
CAATCTCAAAAATTAAAATAATAAAAATTCAAATGAAATTATCACACAAA
AAGAGTACATTCTTCACTGTTAAAATCTGATCCTAGAAAATATTTCTCTG
TAATAAACTTCAAATTCCTGATGCCTCATTTGACTAAACCTTCTTACATT
CACCTTCTACCTTCCCCATTAGAATATAAACAAAGTTTATACATTGAAGG
AGAACCACAACATTGTGAGAAAACTAGCATGGGTCTAAACTTCACACCAT
GTGAGTGAACCAAGGTATGATATTGCTATATATTTTTTCTTTATTCAATG
GAATAGTATTGAAGACCCAGAAATAAAACCTCATACTTAGAGTCACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_o09.b1 MSMg01no299_o09.b1 CHROMAT_FILE:
MSMg01no299_o09.b1 PHD_FILE: MSMg01no299_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:57 2005
         (531 letters)



>mm_chr13_75690081_75691011
          Length = 931

 Score =  795 bits (411), Expect = 0.0
 Identities = 458/479 (95%), Gaps = 12/479 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacaaattaccctgttggtacatttgtagtctcagataaagcaccagtcagaag 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gaattccacaaattattctgttggtacatttgtagtctcagataaagcaccagtcagaag 581

                                                                       
Query: 65  acctcagctcatcttgaccttgtacatgaaggtgaaatgcctgtgttctctgggcactat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 acctcagctcatcttgaccttgtacatgaaggtgaaatgcctgtgttctctgggcactat 521

                                                                       
Query: 125 aactgagtgagttggttagccttgttcttctaaacttgtttcaaataacttgttaaagaa 184
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aactaaatgagttggttagccttgttcttctaaacttgtttcaaataacttgttaaagaa 461

                                                                       
Query: 185 tacgaagtgttgttattacttaaactaaattaactaaactaatatagatgttaagatgtt 244
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 460 tacgaagtgttgttattacttaaactaaattaactaaattaatatagatgttaagatgtt 401

                                                                       
Query: 245 catatagacatatttggttatggtatgtatttcattttaataagcatttttactgctttg 304
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 400 catatagacatatttggttatggtatgtatttcattttaataagtatttttactgctttg 341

                                                                       
Query: 305 ttaaaaactggtcaggcgaaaattacatctgaatctattgatagggagaaatggatacta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttaaaaactggtcaggcgaaaattacatctgaatctattgatagggagaaatggatacta 281

                                                                       
Query: 365 gactacctaacatttcttttttgtggagtgtagactgacttgttcagcagttctatgact 424
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gattacctaacatttcttttttgtggagtgtagactgacttgttcagcagttctatgact 221

                                                                      
Query: 425 gttacaat-actctaatactcaagtgctggtgaggaatgatatattaattatatatata 482
           ||| | || |||||||        ||||||||||||||||| ||||  |||||||||||
Sbjct: 220 gtttc-ataactctaa--------tgctggtgaggaatgatgtatt--ttatatatata 173


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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