BAC Information

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BAC

Clone NameMSMg01-300D16
Chromosome13 (Build37)
Map Location 76,976,374 - 76,976,661
singlet/doubletsinglet
Overlap geneMctp1
Upstream geneGlrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, LOC666603
Downstream geneEG666607, Ankrd32, 2210408I21Rik, LOC631139, LOC675063, D13Mgi7, 1110033M05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300D16.T7 (MSMg01no300_d16.b1)MSMg01-300D16.TJ (MSMg01no300_d16.g1)
ACCAG426774AG426775
length735735
length of high quality
(start - end)
319 (45 - 363)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no300_d16.b1 PHD_FILE: MSMg01no300_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:20 2005CHROMAT_FILE: MSMg01no300_d16.g1 PHD_FILE: MSMg01no300_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCATTTTTCATAGCTGAGTAGTAATCTATTATATAAATGTATGAC
ATTTTCTGTATACATTATACTCCCGAGGGCCATCTGGGTTCTTTCCAGCT
TCTGGCTATTATAAATAAGGCTGCTATGAAATACTGGAGCATGTGTCCTT
ATTACATGTTGGAGCATCTTCTGGGTATATGTCCAGGAGTGGTATAGCTG
GGTCCTCTGGTAGTACTATGTCCAATTTTCGGAGGTACTGCCAAACTGAT
TTCCAGAGTGGTTGCACCAGCTTGCAATCCCATAGACAATGGAGGACTAT
TTCTCTTTCTTCCTTCTCTCGCCCCCCTCCGCTGTCACCTGAATTTTTGA
TCTTAGCCATTCTGACTAGTGTGAGATAAAATCTCGGGGTTGTTTTGATT
TGCATTTCCCTGATGACTAAGGATGTTGAATATTTCTTAGCTTACTTCTT
GGCCATTTGATTTTCTCAGCTCAGAATTCTCTTTTTAGCTCTGTTCCTCA
TTTTTAATGGGGTTATTTGGTCCTCTAGAGTCTAACTTCTTAAGTTATTT
GTATATATTGGATATTATCCCTCTATCATATATAGGGTTGGTAAAGATCT
TTTCCCAATCTGATGGCTGCAATTTTGTCCTATGGACAGTGTCTTTTGCC
TTACAGAAGCTTTGCAATTTTATGAGGTCTCATTN
CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGGATTAAAAATACACAGCTTTT
TCTTAGCATTTATTAAATCTAATGGAAAGTTACACCATTATGTCAAGGTT
TGTCAGGATGGGTACTGTGAGCTATGTACTCAAAGATGATTCATACTTGA
AAGAAGGGAAATAAAGTTTAACATGTCTCTCTCTCTCTCTCTTCCCTCTT
TTCTTTTCTAATATTTAGAGAAAAATAATAATACTTCTTGTTTCCATTGT
TCCACTATTCCTGAAACACAAAGTGAACTCCCAGGGTTATTTGTTATTGT
AGTTGCACCCCTACTTCTTGNTCTGCCGCCACGCACGCTCAATTAATTAA
AGAGTTCACCAAAGTGTGGAGTTCACACGAAACTTACATTGAGTGTTCAT
TTGCTACATCAAGTACAGAATTTCCTCCCACTCAACACATTCCTTTACAG
CAAATGCCAAAGTCTGGGGCTGAGTTTTATACCCTAAGACTTCCAGAGGA
CATGCCAAGCACCCGCTATCTTTGAAACTACCATTACTAGCAGTGAGGAG
CTTTGACACTGCTGATTTGCCTCTTTGCATGGTCAACTTCTGCACTGTAA
GATCATCTCCAAGTCCTCTGCCATATGGAACATTCAGTGGTTTCATCACG
TTGCTGAGAACCCATGCACTCTTTACTTTTGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_d16.g1 MSMg01no300_d16.g1 CHROMAT_FILE:
MSMg01no300_d16.g1 PHD_FILE: MSMg01no300_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:20 2005
         (288 letters)



>mm_chr13_76976174_76976861
          Length = 688

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagggattaaaaatacacagctttttcttagcatttattaaatctaatggaaagttacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aagggattaaaaatacacagctttttcttagcatttattaaatctaatggaaagttacac 429

                                                                       
Query: 61  cattatgtcaaggtttgtcaggatgggtactgtgagctatgtactcaaagatgattcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cattatgtcaaggtttgtcaggatgggtactgtgagctatgtactcaaagatgattcata 369

                                                                       
Query: 121 cttgaaagaagggaaataaagtttaacatgtctctctctctctctcttccctcttttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cttgaaagaagggaaataaagtttaacatgtctctctctctctctcttccctcttttctt 309

                                                                       
Query: 181 ttctaatatttagagaaaaataataatacttcttgtttccattgttccactattcctgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ttctaatatttagagaaaaataataatacttcttgtttccattgttccactattcctgaa 249

                                                           
Query: 241 acacaaagtgaactcccagggttatttgttattgtagttgcaccccta 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 acacaaagtgaactcccagggttatttgttattgtagttgcaccccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)