BAC Information

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BAC

Clone NameMSMg01-300H14
Chromosome13 (Build37)
Map Location 19,128,544 - 19,128,778
singlet/doubletsinglet
Overlap geneAmph
Upstream geneLOC625310, 4930448F12Rik, Pou6f2, Vps41
Downstream geneLOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300H14.T7 (MSMg01no300_h14.b1)MSMg01-300H14.TJ (MSMg01no300_h14.g1)
ACCAG426952AG426953
length749750
length of high quality
(start - end)
237 (122 - 358)109 (122 - 230)
definitionCHROMAT_FILE: MSMg01no300_h14.b1 PHD_FILE: MSMg01no300_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:38 2005CHROMAT_FILE: MSMg01no300_h14.g1 PHD_FILE: MSMg01no300_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTATTCGAGGGCTGCTGTATAGGTGTGCTTCCTCTTTTAGCTCTGTC
TGTCTTCATCACAGAAGTACCGTTTAAAATTTTGACTGTTAGGGTATCAA
CAATTCTAATAAGTAATATTTCTGAGCACTGATTGGCAATCATTAAAATA
AACTTTTCCATGTGTTTCAACAGTGGATCCTCAGATGTCTACTCTCAGTG
TTATTATGCCTAATTTCAGGTAAAAAGAGTTTGATAGAAAAATATCTCAG
CCTGATAGCAGGTCTGGTATGTGAATTGTGCAACTGGCACTAGTGTACTC
TTTGCCTTATCTTATTGCCGCCCCGCCCCATACACCCCTTCCATGGGAGA
CATTGTCTGTTTCTTAAAAATAAAAACAACAAACAATCTGTAAGAACAAA
ACTTCACAACCAGCATTAACATGCTGACACAGCATAGACTTGAACTACTC
ATTCCAAACATTTTCTCTGATCCAGCTATAATTCTTTTACTTTAAAAATG
TAGATTATTTTCTTTAAGGAAACCTAACCAATGGACAGAAGCTAGTGACC
CCTCTGGCTGAATTACGGAAAAGCTGGAAGAGGCTGAGGAGGAGGGCAAT
TCTTATAGAAAGGCCAGCAGTCTCAATTAAATTGTTCCCCTGGATCTGTC
AGACCCTACGTCATCACAGAAGCAGCATACATCGGTTAATATGAGGCAC
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTAGAAGAAGGAGAAAAAATGAAAATAAGCT
ATTTCAGAGCCCTTCTACCCCCAGACAGAAAACGGGAGACGTCCTGCTTC
CTCTCTGGCTCCTATGGAAATATTTTTAGCTTGGAATAGGATATCTGTGT
TCTATTTTCTGTTTTTTGGTGCACCAAATTGCCTATATGTCTGTCAACTC
GTGTTTGCTTTTGCTTGGATGATTGAATGACTGCTGTTCTGTGTTTCATG
TCGAAAAATAAAATTTTTGTCTCACTCTGCACAGCAAAAACTGACCAGAC
AGTTTTACATTGGTTCCCNAGNACAGNANCCCTGAAAAAGCCCTGATGAA
GGCTGANTGCTTTTTGCAAACATTTGATTGTAACAGCCGGGTTGAGTAGA
ATTGGAAACCCAAGGCTGGAGTTATTCTACACAGTCTAATAACACAGGTT
ATATGCAAAAGCAGTGCACAAAGGGCATAACGAGTATGCCTGACTACAAA
CTACTTATCTTTACAACCAGAAGGTAAACCCTCTCCAGGTATAATGGATA
CTGCAGCTTATATCCGTCTTATATCTAGTCCCCGGTGCGCCGCTTCCTGC
TCTGCTCATTCTTCCTCACATAACTCATATAGGCTCACGACTTGACGCTT
TTTTCTTTTATCCGTGCCCATTCCCTACCACGTATAGACCCCTCAAGCAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_h14.b1 MSMg01no300_h14.b1 CHROMAT_FILE:
MSMg01no300_h14.b1 PHD_FILE: MSMg01no300_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:38 2005
         (237 letters)



>mm_chr13_19128344_19128980
          Length = 637

 Score =  426 bits (220), Expect = e-124
 Identities = 232/236 (98%), Gaps = 2/236 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttaaaattttgactgttagggtatcaacaattctaataagtaatatttctgagcactg 60
           ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 gtttaaaattttgtctgttagggtatcaacaattctaataactaatatttctgagcactg 260

                                                                       
Query: 61  attggcaatcattaaaataaacttttccatgtgtttcaacagtggatcctcagatgtcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attggcaatcattaaaataaacttttccatgtgtttcaacagtggatcctcagatgtcta 320

                                                                       
Query: 121 ctctcagtgttattatgcctaatttcaggtaaaaagagtttgatagaaaaatatctcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctcagtgttattatgcctaatttcaggtaaaaagagtttgatagaaaaatatctcagc 380

                                                                   
Query: 181 ctgatagcaggtctg-gtatgtgaattgtgcaactggcactagtgtactctttgcc 235
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgatagcaggtctgag-atgtgaattgtgcaactggcactagtgtactctttgcc 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)