CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACATGCCAGCCATAATTGTTTCTACAAGATTTATCTCTGCCTTCTAC
ATTTTCCATTAGGATCTTTATTTTACAAATTGAGCACCACACAAGCTGGG
CTTTAAATCTGAAGTAATATGCATGCTTTCTTTATCTAATGAAGTGATTT
ACAGATAATAGCACTGTCTTTGTTTACTTTTGCTTTACTAATACAACTTT
AACATGGTGTAAAATGAAAGGCAATCAAGATTAACTGGCTTATTATCTTC
AGTTTCCAAGCAAGGAGTCAACCAAGTAATTAAAGAAAAGCCCATATTTG
AATTGCACTCTAATCCTAAAAAAAGAACAGAAAAAGAAAAAAAAAAAGAA
AAAAAGACAAACTAAAGAATTGAAGTTTTTCTTTCTTTTTCTATTATTAT
TATTATTAATTTTACCTCAGACATTGTGTAAAGTAGCATAAGTCTAATGG
ATAACAGATGCTATAGTTAAAGGAACCAGCAATAATAATTAATATTATTG
GGAATTAATTTAATGCTAGACACAATTTTTAAAACTTTAAACCATTATTC
TCACAATAAGACTACATAATTTAAATTAATTGTGGCTTCTGACTTTCTCA
TTGTGGCTCACAGTAGATTACTGGAGTAGACTTTCTATCAGCCAATAAGA
AAAATTTCATCAGAGACAACTGAATCAAAAGGAGGATAAAGTTT

ATTTTTGTNTNNNTCTTACTCTTGTTACAATTTTTTATTCCATTTCTTTG
TTTGTTTTAGTTTTTTTTTTTTTTTTTGTTGGTGTTTTTGTGTGAGTTTT
TATGGGTTGTACACTGTTTTCTTGGCTTTTCGTCNNGTCATTTTTGTGTT
TATATATGTTAGGGGGGTGCGGCGGCGNCCTCTTCTNCTTTTTTTAATAA
AAATAAAATATTGTTTTGTGTGTTTTGNGTGTTTGAANCACTCACACACC
CCCCCCCNCAATAAAGGGGGGGGTTTAAGGGTCTCCCTTGGGGGNNCGGG
GGGACCCGCGACCCCCTTGGGGNCTTTTGCTTTCTGGAAAAAATNTTNGT
AGGGGTGGGNAACAACTTTATTTAGGNAAAGGGGGAAATCCTCCGGCCCG
GGGGAAAAATTTTTCCCCTTGGGATGGGGNNNNNTCTCTTTTCCCAAAGA
GCAAATTTGCCTTTGCCCTTTTCCCAAAGGGGAAAAAAAAAAAAAAAGNT
GGGCGCCCAAGGGNTCCCCTTTCAAAAAAAATTGGGGGTGGGAATTTTCT
AAACTTAAAATTTTCTAGTAAAATTTCCCTGAAAAAAGGTTTAATTTTTT
CCGGNGGGGTTGGGGGAAAATGGGGAATTTTCTTTTTTTTTTAAAAAAAA
AAAAAAAAAGGGGGGAAGCCTTAAACATGTGTGTTGTTGTTTTTTAAAAA
AAAGGGGGGGGTTTTGGAAAAAAAAACCGGGGGGGAATTTCACCCTTTTT
TTTTTTTTTTTTTTATAAAAACACTTTTTTTTTTTTTTTTTTTTTAAAGA
GGGGAAAAATTCTTTTTTTTTG

Query= MSMg01no301_f01.b1 MSMg01no301_f01.b1 CHROMAT_FILE:
MSMg01no301_f01.b1 PHD_FILE: MSMg01no301_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:41 2005
         (664 letters)



>mm_chr13_5229506_5230569
          Length = 1064

 Score = 1000 bits (517), Expect = 0.0
 Identities = 523/525 (99%), Gaps = 1/525 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacatgccagccataattgtttctacaagatttatctctgccttctacattttcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaattcacatgccagccataattgtttctacaagatttatctctgccttctacattttcc 465

                                                                       
Query: 65  attaggatctttattttacaaattgagcaccacacaagctgggctttaaatctgaagtaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 attaggatctttattttacaaattgagcaccacacaagctgggctttaaatctgaagtaa 405

                                                                       
Query: 125 tatgcatgctttctttatctaatgaagtgatttacagataatagcactgtctttgtttac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tatgcatgctttctttatctaatgaagtgatttacagataatagcactgtctttgtttac 345

                                                                       
Query: 185 ttttgctttactaatacaactttaacatggtgtaaaatgaaaggcaatcaagattaactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttttgctttactaatacaactttaacatggtgtaaaatgaaaggcaatcaagattaactg 285

                                                                       
Query: 245 gcttattatcttcagtttccaagcaaggagtcaaccaagtaattaaagaaaagcccatat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gcttattatcttcagtttccaagcaaggagtcaaccaagtaattaaagaaaagcccatat 225

                                                                       
Query: 305 ttgaattgcactctaatcctaaaaaaagaacagaaaaagaaaaaaaaaaagaaaaaaaga 364
           |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 224 ttgaattgcactctaatcctaaaaaaagaaaagaaaaagaaaaaaaaaa-gaaaaaaaga 166

                                                                       
Query: 365 caaactaaagaattgaagtttttctttctttttctattattattattattaattttacct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 caaactaaagaattgaagtttttctttctttttctattattattattattaattttacct 106

                                                                       
Query: 425 cagacattgtgtaaagtagcataagtctaatggataacagatgctatagttaaaggaacc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 cagacattgtgtaaagtagcataagtctaatggataacagatgctatagttaaaggaacc 46

                                                        
Query: 485 agcaataataattaatattattgggaattaatttaatgctagaca 529
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  agcaataataattaatattattgggaattaatttaatgctagaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)