BAC Information

Click to search

BAC

Clone NameMSMg01-301F16
Chromosome13 (Build37)
Map Location 62,642,758 - 62,643,390
singlet/doubletsinglet
Overlap gene6720457D02Rik
Upstream geneCtsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, EG665503
Downstream geneLOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301F16.T7 (MSMg01no301_f16.b1)MSMg01-301F16.TJ (MSMg01no301_f16.g1)
ACCAG427580AG427581
length751741
length of high quality
(start - end)		637 (39 - 675)641 (68 - 708)
definitionCHROMAT_FILE: MSMg01no301_f16.b1 PHD_FILE: MSMg01no301_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:44 2005CHROMAT_FILE: MSMg01no301_f16.g1 PHD_FILE: MSMg01no301_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:44 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
CATCCCACTCTCACCAATGGGCAAGTCATTGAAACAGAAACTAAACAGAG
ACACAGTGAAAGTAACAGAGGTTATGAACCCAACAGATTTGACAGATATT
TACAGAACATTTTACCTAAAACAAAAGAATACACCATCTTCTCAGTGCTT
CATGGTATCTTTTCTCCAATCAACCATATAATTCGTCTTAAAGCAGGCCT
CAACAGATACAAGAAGATTGAAATAATCCCGCACATCCTATCAGATCACC
AAGACATGAGGCTGCTGGGTCTGGTTTCACTCACAGAAGATACACAAAAC
CCTCAAGAGACTGAGTCCCCAGGAAGTTTAGAGCTTTGGTTGGGGGTGGG
AGGACATCCTAGGGGAGACAAGGGGATAGGTAGTAGGTATAGAATGTGGA
ACAGTCTGAGGGTGGATCAGAAGGGGAATAAAATCTGGAGTGTAAAAAAG
AAAGAAAAAAAAATAAAAAAGAAAAAAAATCTCTGAAAATACCAAGTATC
TAGCTTTAGTTAAAGCTAAAAGAGGAGCCAACTTAGAGAGACTTTGCATT
ATTCTCCATGTGTTGCTATCCTTAACTCTTCTTTAGGTTCTCACCCCAGG
TTATAATGTGAACAATTTAACAATGAACTGAACACTACTGGGGATCTGAC
CAGCCTCTTAGGCAGATGGGAGATGAACATAGGAGAGATATTCCAGACTC
T

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTAAGGTAATCGGGTCTGACAATGGACCAGCCT
TTGTTGCCCAGGTAACCCAGGGCTTGGCCACTCAGTTGGGCATCAATTGG
AAATTACACTGTGCTTACCGCCCTCAAAGCTCAGGACAGGTAGAGAGGAT
GAATAGAACCTTAAAAGAGACCTTGACTAAATTAGCCATTGAGACCGGCG
GGAAAGACTGGGTGGCTCTCCTCCCTCTTGCGCTCTTCTGAGCCCGGAAC
ACTCCTGGACGTTTCGGGCTCACTCCTTTTGAAGTTCTGTATGGAGGACC
TCCCCCCTTAATAGAAGCTGGTGGAACATTAGTTCCTGACTCTGACCCTG
TCTTACCCTCCTCTTTGCTTATTCATTTAAAGGCCTTAGAAGTGATTAGG
ACCCAGATTTGGGACCAACTGAAAGCAGCCTATACCCCAGGGACCACCGC
AGTACCCCACGGGTTCCAAGTTGGAGACAAAGTCTTGGTCAGGCGGCATC
GAACCGGCAGCCTTGAGCCACGGTGGAAGGGACCCTATTTGGTGTTACTG
ACAACCCCTACTGCGGTAAAAGTTGACGGAATCGCCTCCTGGATCCACGC
CTCCCACGTCAAGAGGATCACCAGCCAAGATGAAGATAACCACGACGACA
ATTGGACAGTGGCAACCACTGACAATCCTCTTAAGCTTCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_f16.b1 MSMg01no301_f16.b1 CHROMAT_FILE:
MSMg01no301_f16.b1 PHD_FILE: MSMg01no301_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:44 2005
         (637 letters)



>mm_chr13_62642554_62643590
          Length = 1037

 Score = 1116 bits (577), Expect = 0.0
 Identities = 619/633 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacatcccactctcaccaatgggcaagtcattgaaacagaaactaaacagagac 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattcaacatcccactctcaccaatgggcaagtcattgaaacggaaactaaacagagac 264

                                                                       
Query: 65  acagtgaaagtaacagaggttatgaacccaacagatttgacagatatttacagaacattt 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acagtgaaagcaacagaggttatgaacccaacagatttgacagatatttacagaacattt 324

                                                                       
Query: 125 tacctaaaacaaaagaatacaccatcttctcagtgcttcatggtatcttttctccaatca 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 tacctaaaacaaaagaatacaccatcttctcagtgcttcatggtaccttttctccaatca 384

                                                                       
Query: 185 accatataattcgtcttaaagcaggcctcaacagatacaagaagattgaaataatcccgc 244
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 accatataattcgtcttaaagcaggccttaacagatacaagaagattgaaataatcccgc 444

                                                                       
Query: 245 acatcctatcagatcaccaagacatgaggctgctgggtctggtttcactcacagaagata 304
           ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| 
Sbjct: 445 acatcctatcagatcaccaaggcatgaggctgctgggtctggtttcactcagagaagatg 504

                                                                       
Query: 305 cacaaaaccctcaagagactgagtccccaggaagtttagagctttggttgggggtgggag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cacaaaaccctcaagagactgagtccccaggaagtttagagctttggttgggggtgggag 564

                                                                       
Query: 365 gacatcctaggggagacaaggggataggtagtaggtatagaatgtggaacagtctgaggg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gacatcctaggggagacaaggggataggtagtaggtatagaatgtggaacagtctgaggg 624

                                                                       
Query: 425 tggatcagaaggggaataaaatctggagtgtaaaaaagaaagaaaaaaaaataaaaaaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggatcagaaggggaataaaatctggagtgtaaaaaagaaagaaaaaaaaataaaaaaga 684

                                                                       
Query: 485 aaaaaaatctctgaaaataccaagtatctagctttagttaaagctaaaagaggagccaac 544
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 685 aaaaaaatctctgaaaatacaaagtatctagctttagttaaagctaaaagaggaaccaac 744

                                                                       
Query: 545 ttagagagactttgcattattctccatgtgttgctatccttaactcttctttaggttctc 604
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 745 ttagagagactttgcattattctccatgttttgctatccttaactcttctttaggttctc 804

                                            
Query: 605 accccaggttataatgtgaacaatttaacaatg 637
           | ||||| |||||| ||||||| ||||||||||
Sbjct: 805 atcccagattataaagtgaacagtttaacaatg 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |