Query= MSMg01no301_n18.b1 MSMg01no301_n18.b1 CHROMAT_FILE:
MSMg01no301_n18.b1 PHD_FILE: MSMg01no301_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:21 2005
(564 letters)
>mm_chr13_111389167_111390130
Length = 964
Score = 853 bits (441), Expect = 0.0
Identities = 483/497 (97%)
Strand = Plus / Minus
Query: 5 gaattcctgctcatgccgcgggacttcgatgtggtcatggaaatgtgttttccatatata 64
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gaattcctgctcagggggcgggacttcgatgtggtcatggaaatgtgttttccatatata 439
Query: 65 ctaattttttaactcataagtagggcttctttaactagcctttaaaaatactgtctttaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctaattttttaactcataagtagggcttctttaactagcctttaaaaatactgtctttaa 379
Query: 125 ttgatagtaaagtatgctatatgttcatatcatactctaaaatatgataatttattttca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttgatagtaaagtatgctatatgttcatatcatactctaaaatatgataatttattttca 319
Query: 185 ctttcttttggatgaaaattggaactcaccctggagttgggggagggggtgtagtacaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctttcttttggatgaaaattggaactcaccctggagttgggggagggggtgtagtacaat 259
Query: 245 tcacgattttttactgtttagtgaactgaagttctgtgagctagcagactagatgcatgg 304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 258 tcacgattttttactgtttagtaaactgaagttctgtgagctagcagactagatgcatgg 199
Query: 305 acttggagcttcaggccttggttgaatcttggctctacaccttgctgaattagtgtgatg 364
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 198 acttagagcttcaggccttggttaaatcttggctctacaccttgctgaattagtgtgatg 139
Query: 365 tgtagtgagctattcaatgtcttttacttaggttccccatcggtgacacgatggtgttat 424
||||||||| ||||||||||||||| ||||| |||||| ||||||||| |||||||||||
Sbjct: 138 tgtagtgagttattcaatgtcttttgcttagtttccccttcggtgacatgatggtgttat 79
Query: 425 agcactattctaggggtttttgatgatccagttaaattatagaagatggtttagacaccc 484
||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 78 agcacaattctaggggtttttgatgatcgagttaaattatagaagatggtttggacaccc 19
Query: 485 atcagaacatggaaatg 501
|||||||||||||||||
Sbjct: 18 atcagaacatggaaatg 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_n18.g1 MSMg01no301_n18.g1 CHROMAT_FILE:
MSMg01no301_n18.g1 PHD_FILE: MSMg01no301_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:21 2005
(588 letters)
>mm_chr13_111219707_111220692
Length = 986
Score = 1006 bits (520), Expect = 0.0
Identities = 571/588 (97%), Gaps = 2/588 (0%)
Strand = Plus / Plus
Query: 1 ggtccacaggacaagagaaagtcaaggtctacactagaactgagttagtctagtcacagc 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtccacaggacaagggaaagtcaaggtctacactagaactgagttagtctagtcacagc 260
Query: 61 ccgtcttgaaatgaggagccacgtggtaactctttaggctttggagtgcaggccatggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgtcttgaaatgaggagccacgtggtaactctttaggctttggagtgcaggccatggtc 320
Query: 121 tctagtagctgctcacctgtgctgatatgtagtgggaaagccacccatgcataatcggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctagtagctgctcacctgtgctgatatgtagtgggaaagccacccatgcataatcggtc 380
Query: 181 aatgaacagactcaaccttgtgtcgggaaaccttcaccgtacaaccacgcgtgcaggttt 240
||||||||||||||||||||||||||||||||||| || ||| |||| ||||||| |
Sbjct: 381 aatgaacagactcaaccttgtgtcgggaaaccttc-cc-tacgtccacatgtgcaggcat 438
Query: 241 ccacaaagatttggtctaaggctccagcttataactactgtgtaaggcgcttataaaagt 300
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 439 ccacatagatttggtctaaggctccagcttataactactgtgtaaggcggttataaaagt 498
Query: 301 aggagcttagacaggagaactccatcggtgggctttcagggtttggcttgatgaacttga 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 499 aggagcttagacaggagaactccatcggtgggctctcagggtttggcttgatgaacttga 558
Query: 361 gagtgactgctgacctacacaaactacactacctatttgggcaatgtatggcttccgtgt 420
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 559 gggtgactgctgacctacacaaactacactacctatttgggcaatgtatggcttccatgt 618
Query: 421 atgagtgtgatgaacatggcggccacttcccagctatcttttccttactggtcggtgagg 480
||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||
Sbjct: 619 atgagtgtgatgaacatggcggctacttgccagctatcttttctttactggtcggtgagg 678
Query: 481 ggaaataccattctcagaatggggatacgttttaagaagtatatttccagcctttcaggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggaaataccattctcagaatggggatacgttttaagaagtatatttccagcctttcaggc 738
Query: 541 agcaagatttggtcacaaaacattatttgtctaatgaagtacgaatag 588
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 agcaagatttggtcacaaaacattatttgtctaatgaagtacgaatag 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 986
Length adjustment: 10
Effective length of query: 578
Effective length of database: 976
Effective search space: 564128
Effective search space used: 564128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
