BAC Information

Click to search

BAC

Clone NameMSMg01-302E22
Chromosome13 (Build37)
Map Location 82,145,157 - 82,145,446
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
Downstream geneLOC238756, LOC667018
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302E22.T7 (MSMg01no302_e22.b1)MSMg01-302E22.TJ (MSMg01no302_e22.g1)
ACCAG428242AG428243
length728732
length of high quality
(start - end)
337 (384 - 720)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no302_e22.b1 PHD_FILE: MSMg01no302_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:55 2005CHROMAT_FILE: MSMg01no302_e22.g1 PHD_FILE: MSMg01no302_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAAAAAAAAAAAAAATGCCTAGGCCAAGAGCTTCGGCTCATTCCT
TGACTAACTCTTAACTTAAATTTACCCAATGAAACATTGTAGTCTACCAC
TTGGTTAGTCACCTCTCCTTCAGTCCCATTATGCTTTCTTCCTTGTGTCT
CCTCAGTGTCCCCTCAGTGTCTCTCTGAGTTCATCAACCTGATGGTTTAT
GTCAGTCTCTTCATTTGTCTCTCATCTAGTTCCCCAGGACTCTCTTATCT
CTTATTATTTCTTAGAATCATCCTTTTTATTGCAAATGTCCCACCTTCTA
TTTCCTGCCTCAATTCTTTGTCCATCCGCTCTTTTATTGACAGTACTTAT
AAGAATACTAGATCTACTTCTAGACTATTTTGTCTTCAGAATTTTATCAT
CGTCATCATCATCATATTCACTTTACATCCCACTCACTGCCAGCCTCCTG
ACCACCCCCACCCACAACCTTTCCCCCATGGCCCCTCCCCTTCTTCTCTG
AGTGGATGGATGCCCCCTGGGAATTCCCCCAACCTGACACATCAAGTATC
TCTGAGGCTAGGTGCTTTCTCTCCTACTGAGGCCAGACAAGGCAGCCCAG
CCAAAAGAACATATGCCAAATAGAGGCAACAGCTTGTGGGATAGCCCTCC
ACTCCAGTTATTCAGGATCCAGATGAAG
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAAGGAGCAGAGTTGAAATAGTGCA
AATAGAAGCACTTAAAGTACACACCGTGGATTAGAGTGTGGAACTTGAGC
CTCTACATCCTTGGCAGATTTGTGCAGGATGCTTTAACAGTACGATAATA
TTTTGTTAGTGAATGATATAGATTTGTCTTTCTATGAAGGTATAAGGAGA
GGTATTTGATAATCTACGATTAATAATAATTTAGATGGTGCTTATTTTAA
AATGTTTCATGTCAGTGATTGATGCTAGAATCCAGGATGGATGTGTCAGA
AAGTAAGCAGCAAGCTTATTTTTGCACCCCCGCACGGAATCCGGCTAATC
CAGCCCTACTTGCACTGCTCTGTGGTGGTACAATTATCCTTTCAGGCCGC
GTGGAGTCATTTAACGGCTGATTTACCATCAGAGAGTTACACAGGGAAGC
CACAGGGCAAGGGACCTAATTAGAATTAAACACTGACAGTAATTTGGGCC
TGTTTTCATAAGTTGCTTGGTAAAGGAATACCCCAGCTCTGGGTTATCAG
TATGAATTAATGGTGGCTTCTTGTGCTCCTGGCCAAATTATTGTAAACTA
GCTAGCATACAAATTATTATGGGAAACATTTTTTGATATAGCAAAACTCG
ACTTATTCATCTCATAAATCTGCAGATCCGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_e22.g1 MSMg01no302_e22.g1 CHROMAT_FILE:
MSMg01no302_e22.g1 PHD_FILE: MSMg01no302_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:55 2005
         (292 letters)



>mm_chr13_82144957_82145648
          Length = 692

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaggagcagagttgaaatagtgcaaatagaagcacttaaagtacacaccgtggattaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaggagcagagttgaaatagtgcaaatagaagcacttaaagtacacaccgtggattaga 260

                                                                       
Query: 61  gtgtggaacttgagcctctacatccttggcagatttgtgcaggatgctttaacagtacga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtggaacttgagcctctacatccttggcagatttgtgcaggatgctttaacagtacga 320

                                                                       
Query: 121 taatattttgttagtgaatgatatagatttgtctttctatgaaggtataaggagaggtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatattttgttagtgaatgatatagatttgtctttctatgaaggtataaggagaggtat 380

                                                                       
Query: 181 ttgataatctacgattaataataatttagatggtgcttattttaaaatgtttcatgtcag 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgataatctacaattaataataatttagatggtgcttattttaaaatgtttcatgtcag 440

                                                             
Query: 241 tgattgatgctagaatccaggatggatgtgtcagaaagtaagcagcaagc 290
           |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatggatgctagaatccaggatggatgtgtcagaaagtaagcagcaagc 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)