Query= MSMg01no302_h06.b1 MSMg01no302_h06.b1 CHROMAT_FILE:
MSMg01no302_h06.b1 PHD_FILE: MSMg01no302_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:06 2005
(432 letters)
>mm_chr13_54772279_54773110
Length = 832
Score = 746 bits (386), Expect = 0.0
Identities = 415/428 (96%), Gaps = 8/428 (1%)
Strand = Plus / Plus
Query: 5 gaattcaggcaataaccggaggcagaaactccaacacagaccttggaggaatgctgctta 64
|||||||||||| ||| |||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 205 gaattcaggcaagaactggaggcagaaactccatcacagaccttggaggaatgctgttta 264
Query: 65 ctggcttgctctcaggcccctgtatgtgaattgaacccaggactctgcatgccacataag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctggcttgctctcaggcccctgtatgtgaattgaacccaggactctgcatgccacataag 324
Query: 125 cgccctacccactgagtgcagccttgcctcgctttcagggttttggtcctggataggctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgccctacccactgagtgcagccttgcctcgctttcagggttttggtcctggataggctg 384
Query: 185 tggctaaatagcacagaaagtgtttatacatgtgcaaaagtaaatgtgctttcactcggc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggctaaatagcacagaaagtgtttatacatgtgcaaaagtaaatgtgctttcactcggc 444
Query: 245 agatgtaggtagcatgaagccaagctctatgtgggtgctgtcatagcgctgagcactgac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agatgtaggtagcatgaagccaagctctatgtgggtgctgtcatagcgctgagcactgac 504
Query: 305 caggaatgagctgtcttgtttgagggcctttttcagaatatacttttcttcttctcttct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caggaatgagctgtcttgtttgagggcctttttcagaatatacttttcttcttctcttct 564
Query: 365 tcttcttctccttctcctcctcctcctccttgttgttgttggtttgttttttttgggggg 424
||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 565 tct------ccttttcctcctcctcctccttgttgttgttggtttgttttttt-gggggg 617
Query: 425 gg-gggtt 431
|| |||||
Sbjct: 618 ggcgggtt 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space: 348129
Effective search space used: 348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_h06.g1 MSMg01no302_h06.g1 CHROMAT_FILE:
MSMg01no302_h06.g1 PHD_FILE: MSMg01no302_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:06 2005
(487 letters)
>mm_chr13_54972679_54973565
Length = 887
Score = 903 bits (467), Expect = 0.0
Identities = 482/487 (98%)
Strand = Plus / Minus
Query: 1 tctttaaatatgagaataggagtgtccccagagcaatcaacgggacacctccaggtgaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tctttaaatatgagaataggagtgtccccagagcaatcaacgggacacctccaggtgaaa 628
Query: 61 ctgtcacacctaccacaagacaacagctcagagtaaagaacaagaaaggccagtggtgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctgtcacacctaccacaagacaacagctcagagtaaagaacaagaaaggccagtggtgca 568
Query: 121 cggattggtgcctagaacacacaggcagaggggcaaggccgggctctagttctttctctc 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cagattggtgcctagaacacacaggcagaggggcaaggccgggctctagttctttctctc 508
Query: 181 actgggtctcatagtcggggcttcgatgctcgtggctgataatactcatgagtccacaga 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gctgggtctcatagtcggggcttcgatgctcgtggctgataatactcatgagtccacaga 448
Query: 241 atccagtaactgatgtgtggctgggggttgcctctaaaaacatggcggtaccaattaaag 300
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 447 atccggtaactgatgtgtggctgggggttgcctctaaaaacatggcggtgccaattaaag 388
Query: 301 ctgaggctccctcatctccagagcctggaaaggaagtaccagagattttggaggctcttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctgaggctccctcatctccagagcctggaaaggaagtaccagagattttggaggctcttt 328
Query: 361 ggttttagaatatttgcatagacttcaccaaaccatcatccctaacctgagaagctgaga 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 327 ggttttagaatatttgcatagacttcaccaaactatcatccctaacctgagaagctgaga 268
Query: 421 tctaaaaggttttaatatctggcaccatttgcacattcaacaatattgactggcttggcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tctaaaaggttttaatatctggcaccatttgcacattcaacaatattgactggcttggcc 208
Query: 481 ctcaggg 487
|||||||
Sbjct: 207 ctcaggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
