BAC Information

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BAC

Clone NameMSMg01-302N21
Chromosome13 (Build37)
Map Location 92,023,895 - 92,024,213
singlet/doubletsinglet
Overlap geneRasgrf2
Upstream geneEG435376, Rps23, Atg10, LOC100042959, Ssbp2, LOC666889, Acot12, Zcchc9, Ckmt2
Downstream geneRasgrf2, Msh3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302N21.T7 (MSMg01no302_n21.b1)MSMg01-302N21.TJ (MSMg01no302_n21.g1)
ACCAG428631AG428632
length737734
length of high quality
(start - end)
319 (44 - 362)565 (72 - 636)
definitionCHROMAT_FILE: MSMg01no302_n21.b1 PHD_FILE: MSMg01no302_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:36 2005CHROMAT_FILE: MSMg01no302_n21.g1 PHD_FILE: MSMg01no302_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAAAAATGTATAGTTGATCTTCTGGGAGGAGCGTCAGCTAAGGTCTC
TGTCTCTCTCTTTCCCTTTTTTTTTCAGGTCATACAATACCTGCTTGACA
AAGCCCTTGTCATAGACGAAGATTCACTCTATGAGCTGTCACTCAAAATT
GAACCTCGACTCCCTGCTTGAAGATTTGGCCTTGTTCCTAAGGCCATTGG
AATTCTGTGGAAAGCGGGTCACACATGGCGGTGGGGGGCGGGGGGGGGGA
CCCAGAGGGACAACACCTGCCTCCTTTCACCACCAAAGATGGAACTGAAC
TGTAAATCTGTCNCCATAACTCTCGAAACCAGNCCCATGGACCAAAGACA
GATACCCCAGGCTGGGGTGGGAAGGAGAAAACAAAAAAGCTTAGGGGAGC
TGATGGCACATTTTGTATATGGGATGTAATATAGAGATGCTGGTAGCAAT
TGTAATGAAGTGGAATGAAGGTAAACCTCCCCGTGTTCTGTTAGAACTCA
AGGACAAGGTACCACAGAGAACACCTGCAATGTTTCTTTGTCACTCTGCT
AGCCTGGGCTCACCTCTACCAGTACTCTTAATCGCTTCTGTTACAGTTCC
TTTATGCCAAGCATCATGGCCAGCCTGAAGCTTCCTTTCTCGGGCCAGCA
CAGAAGCAGTTTCAGTACGCAGCATGGGTGTGGTTCN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGATTTTGATTTGGAGAATGTTCCTCT
GCCTTTAGTTAGTTTGGCTAACGGTTTGTCTATCTTGTTGATATTCTCAA
AAAAAAAAATTAGCTCTTGGTTTTGCTGATTCTTTTGTGTTGTGTTTGTT
TCTAATTTATCGATTTCAGCCCTGAGTTTGATCATTTCCTTTCATCTACT
CCTCTTAGATATGTTTGCTTCTTTTTAATTTTCAGGTATGCTGTTAAGTT
GCTAGTGTGAGATCATACTAATTTCTTTATGAAGGCCACTAGTGCTATGA
ACTTTCCTCTTAGCACTGCTTTCCTTGTGTCCCATAAGTCTCAGTATGTT
GTGCATTCATTTTCATTGAATTCTAGAAAGGAAGTCTGTTTCTTTATGTA
TTCTTTGACCGCGTGGTCATTGAGTTGGGAGTTTTCCAGTTTCCATGGGT
TTGTAGGCTTTCTATTGTTTCTGTTGTGGTAGAAGTCCAGCCTTAATCTG
TGCTAGTCTGATACAATACAGAGGTTTATTTCAATTTTGTTGTACCTTGT
TGATAATTGCTTTGTGACCAATTATATTGTCAGTTTTGGAGAATGTTCTA
TGAGATGCTGAGAAGAAGGTATACTCTTTTGTGTTTAGGTGAAATGTTCT
ATAGATTTCTGTTAGGTTCATTTGATTCATAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_n21.b1 MSMg01no302_n21.b1 CHROMAT_FILE:
MSMg01no302_n21.b1 PHD_FILE: MSMg01no302_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:36 2005
         (319 letters)



>mm_chr13_92023691_92024413
          Length = 723

 Score =  563 bits (291), Expect = e-165
 Identities = 311/319 (97%), Gaps = 4/319 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaaaatgtatagttgatcttctgggaggagcgtcagctaaggtctctgtctct 64
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 523 gaattcaaaaaatgtatagttgatcttctgggaggagtgtcagctaaggtctctgtctct 464

                                                                       
Query: 65  ctctttccc---tttttttttcaggtcatacaatacctgcttgacaaagcccttgtcata 121
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctctttcccctttttttttttcaggtcatacaatacctgcttgacaaagcccttgtcata 404

                                                                       
Query: 122 gacgaagattcactctatgagctgtcactcaaaattgaacctcgactccctgcttgaaga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gacgaagattcactctatgagctgtcactcaaaattgaacctcgactccctgcttgaaga 344

                                                                       
Query: 182 tttggccttgttcctaaggccattggaattctgtggaaagcgggtcacacatggcggtgg 241
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tttggccttgttcctgaggccattggaattctgtggaaagcgggtcacacatggcggtgg 284

                                                                       
Query: 242 ggggcgggg-ggggggacccagagggacaacacctgcctcctttcaccaccaaagatgga 300
           |||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gggttggggtggggggacccagagggacaacacctgcctcctttcaccaccaaagatgga 224

                              
Query: 301 actgaactgtaaatctgtc 319
           |||||||||||||||||||
Sbjct: 223 actgaactgtaaatctgtc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 723
Length adjustment: 9
Effective length of query: 310
Effective length of database: 714
Effective search space:   221340
Effective search space used:   221340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)