Query= MSMg01no303_d02.b1 MSMg01no303_d02.b1 CHROMAT_FILE:
MSMg01no303_d02.b1 PHD_FILE: MSMg01no303_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:02 2005
(683 letters)
>mm_chr13_74384891_74385974
Length = 1084
Score = 1226 bits (634), Expect = 0.0
Identities = 667/678 (98%), Gaps = 1/678 (0%)
Strand = Plus / Minus
Query: 7 ggaattctctcatttaccttctgagagctcttagactttctgaccctatcctgagcctca 66
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 884 ggaattctctcaggtaccttctgagagctcttagactttctgactctatcctgagcctca 825
Query: 67 ggttgatttcatgtagaccacaggttcttgtcttcatttctgtcttctctttctgtattg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ggttgatttcatgtagaccacaggttcttgtcttcatttctgtcttctctttctgtattg 765
Query: 127 acacgatcactgtgaaaccaaccagaacctttggtcattttcctgtctctccccattgcc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 acacgatcactgtgaaaccaaccagaacctttggtcattttcctgtctctccccattgcc 705
Query: 187 cagatctgcctctctctagaaggcttcttcagggtgtcagcactgtgggtcttgatatga 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 cagatctgcctctctctagaaggcttcttcagggtgtcagcactgtgggtcttgatatga 645
Query: 247 aatcttctaaggcagcctcaaagcaaaccagaaactgttgttctgtgttatagttgggta 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 aatcttctaaggcagcctcaaagcaaaccagaaactgttgttctgtgttatagttgggta 585
Query: 307 gccctttggtagatacaggatgtaaggtttaaaacctccctcaacttttatagtatgctg 366
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 584 gccctttggtagatacaggatgtaaggtgtaaaacctccctcaacttttatagtatgctg 525
Query: 367 ttttgttggtagtgtctggtagtctgaatcctccacattgatgtttttgctctttgaaag 426
||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 524 ttttgttggtagtgtctggtagtctgaatcctccacactggtgcttttgctctttgaaag 465
Query: 427 ttttgtaacattttcctttgcctttgtcttccttaaactttgctatgatgcatctttttt 486
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 464 ttttttaacattttcctttgcctttgtcttccttaaactttgctatgatgcatctctttt 405
Query: 487 tcttatttaccctggttgtcccctctaacatcttcaactctgaaagtttttgccttaatt 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tcttatttaccctggttgtcccctctaacatcttcaactctgaaagtttttgccttaatt 345
Query: 547 cctggttctttgtttatttttaggagttgtgctattcaaggatcatcgctatcctaggaa 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cctggttctttgtttatttttaggagttgtgctattcaaggatcatcgctatcctaggaa 285
Query: 607 aacacctagaatttcta-tttttttttgtacagtcgcccatccctatgcacacaggcaca 665
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 284 aacacctagaatttctattttttttttgtacagtcgcccttccctatgcacacaggcaca 225
Query: 666 agagcttgctgttcatct 683
||||||||||||||||||
Sbjct: 224 agagcttgctgttcatct 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1084
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1074
Effective search space: 722802
Effective search space used: 722802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no303_d02.g1 MSMg01no303_d02.g1 CHROMAT_FILE:
MSMg01no303_d02.g1 PHD_FILE: MSMg01no303_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:02 2005
(603 letters)
>mm_chr13_74219563_74220565
Length = 1003
Score = 1143 bits (591), Expect = 0.0
Identities = 600/603 (99%)
Strand = Plus / Plus
Query: 1 agctgtggaaggccgtggtgacatcctgaatgctttctttgattgctagctctggtggcc 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctgtggaaggctgtggtgacatcctgaatgctttctttgattgctagctctggtggcc 260
Query: 61 ttgggagaggtttcagtgtctgtgtcagccaccaagtggtggagatctgagctgtaggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ttgggagaggtttcagtgtctgtgtcagccaccaagtggtggagatctgagctataggac 320
Query: 121 ataagaagctatggcatgctactgtgggagagctgggtgccaaggataacgtcatctctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataagaagctatggcatgctactgtgggagagctgggtgccaaggataacgtcatctctg 380
Query: 181 tgcttcatcacatcctaagggaaatcagctatacctgcttagtcccatgatactcagcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttcatcacatcctaagggaaatcagctatacctgcttagtcccatgatactcagcaa 440
Query: 241 gctgcctttcacattttatagacatggggataggatctcactctggattcccctggtttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgcctttcacattttatagacatggggataggatctcactctggattcccctggtttc 500
Query: 301 cctggtccttgaagtctccatggaatgaatttagaaaagactcagagtgtggtgtaaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctggtccttgaagtctccatggaatgaatttagaaaagactcagagtgtggtgtaaaag 560
Query: 361 aaaggcatggagctgagacaaaaggatggaccatctagagactgccatatccagggatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaggcatggagctgagacaaaaggatggaccatctagagactgccatatccagggatca 620
Query: 421 tcccataattagcctccaaacgatgacaccattgcatacactagcaagcctttgttgcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcccataattagcctccaaacgatgacaccattgcatacactagcaagcctttgttgcaa 680
Query: 481 ggaccatgatattgctgtctcttgtgagactatgccggggcctagcaaacacagaagtgg 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaccgtgatattgctgtctcttgtgagactatgccggggcctagcaaacacagaagtgg 740
Query: 541 atgctcacagtcaactattggatggatcacagggcccccaatggaggagctagagaaagt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgctcacagtcaactattggatggatcacagggcccccaatggaggagctagagaaagt 800
Query: 601 atc 603
|||
Sbjct: 801 atc 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
