BAC Information

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BAC

Clone NameMSMg01-303O16
Chromosome13 (Build37)
Map Location 76,430,055 - 76,573,915
singlet/doubletdoublet
Overlap geneMctp1
Upstream geneLOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276
Downstream geneLOC666603, EG666607, Ankrd32, 2210408I21Rik, LOC631139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303O16.T7 (MSMg01no303_o16.b1)MSMg01-303O16.TJ (MSMg01no303_o16.g1)
ACCAG429367AG429368
length737734
length of high quality
(start - end)
691 (41 - 731)304 (431 - 734)
definitionCHROMAT_FILE: MSMg01no303_o16.b1 PHD_FILE: MSMg01no303_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:57 2005CHROMAT_FILE: MSMg01no303_o16.g1 PHD_FILE: MSMg01no303_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,573,229 - 76,573,915)(76,430,055 - 76,430,357)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CATAGGGTACCAAGTAAATGCTAAATTCATAGGAAATGTCCATTAGCTCC
TTTGATTCATTACTAAAGTATTATGAAAAGATTACTAATTATAATATTCA
ATATCACCTTTTGAAAAGTATAGTTTGCTGGTCCCAGGCTTCTCCTGTTT
TACTTTAGGGACTGTTGGGTCATGCAGAAGTTGGGAAGAAGGTTTACAGT
GGACATCTTCCCTTGACAGGCTCACTGAAAGACAGCAAACAAGCCTACAA
ATGCAGAAGTTGACTTTAGAAATTCACATTCTCCCAGAACCTTGTTCTCA
GGTGCTAGTCAGAGCCTTAACTTAACTAAACCTTACTTGGTGATGCTGCA
CTAATCTGAAAACCATGGTTGATATGTAGATCCAAATGCTCACATTGGTA
TTGTGAGTGTACTTTCTGCGGTAGACAGTGCAAGAAAGCATACATTACAA
ACCAAACAGAACGGAAGAAGCAGAGATAAAAAGCAAGGGGAATCTCCTCA
CGACTGAAAATCGGAGGCAACAGAATTCATCAGTTTGATAAGTCACAGGA
ACTGTGGTTTCCCATACAGACCCTCCAGAGCTTCTTTCTCAGGCTCCATC
CTAACAGCACGTAGGCGCTGGTCTTGAGCATGTCGCTGATTAGTATGTTA
TTTATTATTAAAGGTGTTGACTCTTCTGTTAGTTTAC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGGCATTCCAGCTAGTCCTGTTGCTCTCAT
TGACAGTTCTGTTTAGCCTGTTTCTGCTGGATCATGCTGCTATTGCTGAT
TCATGTTTTTGAACTGGACTATTGGTATCCAGACACTATTGAACTGAACT
GCAGTTATCTTGACAAGCAGATATTGGAATCACCCCCAAAGAACTACGTC
CAAACAAGTCCACATCCCCTTTTCCTGTTGACCATCTTTTCTCCCCTGCC
TTTGCACGGTCGCTAGAAGTGGGGCTGGGGTGTTTGAGGACCCTTATTAA
AATATTTTTTTAAAACTCCACCCCCACCACTTCTTTTCATGAAAAGCCAC
TGATCTGGTCCTTTTTGCATCCTCTCCTCCAAGCAGTGTTGGGATTGGAG
CCTATTTTGATTTTTCCCTCTGGCAACTCTTGATAACTCTGAAAATTATT
CTTGCTTAACTGAAGAATTGTGACTTGTATTTTTGGAGCCTTACCCTTGC
AGCATATCTGTTTTCTTGTGTAAGAGTCAGAGATTTTATAAAGATCAAGA
AAAATTGATGGAGAGAAGTTGACAAGTTCACATTCTGCTTTCTTTCATTG
GTAAGTACTTTTTGATAGAGCACACATCTTTCTTCATAAGTGAGAAAGAA
TGGGCTCAGGTAGTTATGAGTCAGCTGCACAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_o16.b1 MSMg01no303_o16.b1 CHROMAT_FILE:
MSMg01no303_o16.b1 PHD_FILE: MSMg01no303_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:57 2005
         (691 letters)



>mm_chr13_76573025_76574115
          Length = 1091

 Score = 1307 bits (676), Expect = 0.0
 Identities = 685/688 (99%), Gaps = 2/688 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatagggtac-caagtaaatgctaaattcataggaaatgtccattagctccttt 63
           ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 gaattccataggg-acaaaagtaaatgctaaattcataggaaatgtccattagctccttt 833

                                                                       
Query: 64  gattcattactaaagtattatgaaaagattactaattataatattcaatatcaccttttg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gattcattactaaagtattatgaaaagattactaattataatattcaatatcaccttttg 773

                                                                       
Query: 124 aaaagtatagtttgctggtcccaggcttctcctgttttactttagggactgttgggtcat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 aaaagtatagtttgctggtcccaggcttctcctgttttactttagggactgttgggtcat 713

                                                                       
Query: 184 gcagaagttgggaagaaggtttacagtggacatcttcccttgacaggctcactgaaagac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gcagaagttgggaagaaggtttacagtggacatcttcccttgacaggctcactgaaagac 653

                                                                       
Query: 244 agcaaacaagcctacaaatgcagaagttgactttagaaattcacattctcccagaacctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 agcaaacaagcctacaaatgcagaagttgactttagaaattcacattctcccagaacctt 593

                                                                       
Query: 304 gttctcaggtgctagtcagagccttaacttaactaaaccttacttggtgatgctgcacta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gttctcaggtgctagtcagagccttaacttaactaaaccttacttggtgatgctgcacta 533

                                                                       
Query: 364 atctgaaaaccatggttgatatgtagatccaaatgctcacattggtattgtgagtgtact 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 atctgaaaaccatggttgatatgtagatccaaatgctcacattggtattgtgagtgtact 473

                                                                       
Query: 424 ttctgcggtagacagtgcaagaaagcatacattacaaaccaaacagaacggaagaagcag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ttctgcggtagacagtgcaagaaagcatacattacaaaccaaacagaacggaagaagcag 413

                                                                       
Query: 484 agataaaaagcaaggggaatctcctcacgactgaaaatcggaggcaacagaattcatcag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 agataaaaagcaaggggaatctcctcacgactgaaaatcggaggcaacagaattcatcag 353

                                                                       
Query: 544 tttgataagtcacaggaactgtggtttcccatacagaccctccagagcttctttctcagg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tttgataagtcacaggaactgtggtttcccatacagaccctccagagcttctttctcagg 293

                                                                       
Query: 604 ctccatcctaacagcacgtaggcgctggtcttgagcatgtcgctgattagtatgttattt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ctccatcctaacagcacgtaggcgctggtcttgagcatgtcgctgattagtatgttattt 233

                                       
Query: 664 attattaaaggtgttgactcttctgtta 691
           ||||||||||||||||||||||||||||
Sbjct: 232 attattaaaggtgttgactcttctgtta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no303_o16.g1 MSMg01no303_o16.g1 CHROMAT_FILE:
MSMg01no303_o16.g1 PHD_FILE: MSMg01no303_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:57 2005
         (304 letters)



>mm_chr13_76429855_76430558
          Length = 704

 Score =  586 bits (303), Expect = e-172
 Identities = 303/303 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcagtgttgggattggagcctattttgatttttccctctggcaactcttgataactct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagcagtgttgggattggagcctattttgatttttccctctggcaactcttgataactct 260

                                                                       
Query: 61  gaaaattattcttgcttaactgaagaattgtgacttgtatttttggagccttacccttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaattattcttgcttaactgaagaattgtgacttgtatttttggagccttacccttgc 320

                                                                       
Query: 121 agcatatctgttttcttgtgtaagagtcagagattttataaagatcaagaaaaattgatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcatatctgttttcttgtgtaagagtcagagattttataaagatcaagaaaaattgatg 380

                                                                       
Query: 181 gagagaagttgacaagttcacattctgctttctttcattggtaagtactttttgatagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagagaagttgacaagttcacattctgctttctttcattggtaagtactttttgatagag 440

                                                                       
Query: 241 cacacatctttcttcataagtgagaaagaatgggctcaggtagttatgagtcagctgcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacacatctttcttcataagtgagaaagaatgggctcaggtagttatgagtcagctgcac 500

              
Query: 301 agt 303
           |||
Sbjct: 501 agt 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)