Query= MSMg01no304_a21.b1 MSMg01no304_a21.b1 CHROMAT_FILE:
MSMg01no304_a21.b1 PHD_FILE: MSMg01no304_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:11 2005
(467 letters)
>mm_chr13_11762528_11763394
Length = 867
Score = 828 bits (428), Expect = 0.0
Identities = 452/460 (98%), Gaps = 1/460 (0%)
Strand = Plus / Plus
Query: 1 aactttgttagtctttggcaaaaaaaggactttgcaattacattcattttaaaaattaaa 60
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 aactttgttagtctttggcaaaaaaaggaagttgcaattacattcattttaaaaattaaa 260
Query: 61 accagaggttagagaagctaagtagaccttgtctgtaaagatttatttctagatatcttt 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagaggttagagaagctaaatagaccttgtctgtaaagatttatttctagatatcttt 320
Query: 121 atctattatgtctatctaattatacacgcgtggggaggtattgcatatgtgcatgcatgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctattatgtctatctaattatacacgcgtggggaggtattgcatatgtgcatgcatgc 380
Query: 181 agcgcctgagggaagcgaggaggggcatcagatcccctggagctgagcgtacaggtggtc 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 agcgcctgagggaagcgaggaggggcatcagatccc-tggagctgagcgtacaggtggtc 439
Query: 241 ccgagccacctgatgtgggtgctgagaagagaatctaggtcctctgctcttaattcctga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccgagccacctgatgtgggtgctgagaagagaatctaggtcctctgctcttaattcctga 499
Query: 301 gctgtctccccagagcttaaaccaacactaatcaaaatgtaattcttaaaaacaatgaga 360
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 500 gctgtctccccagaacttaaaccagcactaatcaaaatgtaattcttaaaaacaatgaga 559
Query: 361 ttcatgcgctttgatcaccattctgtaaataaagtaaaaaattatgaataacataaatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttcatgcgctttgatcaccattctgtaaataaagtaaaaaattatgaataacataaatgg 619
Query: 421 agtatatgagtatgtgcgtgtgtgtgtgtgtgtgtgtgtg 460
|||||||||||||||| |||||||||||||||| ||||||
Sbjct: 620 agtatatgagtatgtgagtgtgtgtgtgtgtgtatgtgtg 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no304_a21.g1 MSMg01no304_a21.g1 CHROMAT_FILE:
MSMg01no304_a21.g1 PHD_FILE: MSMg01no304_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:11 2005
(699 letters)
>mm_chr13_11937403_11938501
Length = 1099
Score = 1299 bits (672), Expect = 0.0
Identities = 692/699 (98%)
Strand = Plus / Minus
Query: 1 gtgactgtgcctgagaagaggttgacaaacagcagagctggaatttagtgagatacttaa 60
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 899 gtgactgtgcctgagaagaggttgacaaacaggagagctggaattcagtgagatacttaa 840
Query: 61 ttgtaaaaattataataaaacttaaatatcgctagaagattgggtaacagggttttacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 ttgtaaaaattataataaaacttaaatatcgctagaagattgggtaacagggttttacaa 780
Query: 121 ggggtacagacaagtgcctgtattatttctgcttaaaatcacccattctagtacaaagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ggggtacagacaagtgcctgtattatttctgcttaaaatcacccattctagtacaaagtt 720
Query: 181 cacaaatagctgtcacagtacatttaaaaaactgggaccaacaagatggtgcaataggta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 cacaaatagctgtcacagtacatttaaaaaactgggaccaacaagatggtgcaataggta 660
Query: 241 aaggtgttgctttctgagcctgatggcctgaattggtcctctggacccaaatattgaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aaggtgttgctttctgagcctgatggcctgaattggtcctctggacccaaatattgaaag 600
Query: 301 gaaagaaacagtgtttatggttgttttctgatgcccttgcacacacacacccacccaccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gaaagaaacagtgtttatggttgttttctgatgcccttgcacacacacacccacccaccc 540
Query: 361 acccatgtacatgtacactcaataaactactganaaaaattaaaaaaagaatgcagtaat 420
||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||
Sbjct: 539 acccatgtacatgtacactcaataaactactgagaaaaattaagaagagaatgcagtaat 480
Query: 421 ttaaactggtaaattgggataacttgcctacaaaattatcattcaaatttttcattcaaa 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttagactggtaaattgggataacttgcctacaaaattatcattcaaatttttcattcaaa 420
Query: 481 aataactccttgtatttattacaacttttaagaaatgttgacagtaaacaacctcagtta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aataactccttgtatttattacaacttttaagaaatgttgacagtaaacaacctcagtta 360
Query: 541 tgtactctattgggtttaataattatttaacaaaatgtcttatttctgcagcacttctgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgtactctattgggtttaataattatttaacaaaatgtcttatttctgcagcacttctgt 300
Query: 601 tataataaaacttgggcaaatcatcattctgtatttctgattgatgatgatgcatttagt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tataataaaacttgggcaaatcatcattctgtatttctgattgatgatgatgcatttagt 240
Query: 661 aactgctttccatttgaaattttgggttattttcacact 699
||||||||||| |||||||||||||||||||||||||||
Sbjct: 239 aactgctttccgtttgaaattttgggttattttcacact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space: 750321
Effective search space used: 750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
