Query= MSMg01no304_e11.b1 MSMg01no304_e11.b1 CHROMAT_FILE:
MSMg01no304_e11.b1 PHD_FILE: MSMg01no304_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:42 2005
(710 letters)
>mm_chr13_89099694_89100802
Length = 1109
Score = 1311 bits (678), Expect = 0.0
Identities = 702/710 (98%), Gaps = 1/710 (0%)
Strand = Plus / Minus
Query: 1 tctttaaatgttcagtccaagcaataatacaaacaattttaaatggcttgaaggcttgaa 60
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 909 tctttaaatgttcagtccaagcaataatacaaaaaaatttaaatggcttgaaggcttgaa 850
Query: 61 gtgacattaaaaatctacatacttgccttaaataaagcatattttgaaactcaacatatg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 atgacattaaaaatctacatacttgccttaaataaagcatattttgaaactcaacatatg 790
Query: 121 aaaaacatagtgaaagatgtaacttgaagtgaggttaggctgtttctattaaacctgttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 aaaaacatagtgaaagatgtaacttgaagtgaggttaggctgtttctattaaacctgttc 730
Query: 181 ttttcttaatgatcaagggaacatttcctttcacatagttttaatttatagtaacaagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ttttcttaatgatcaagggaacatttcctttcacatagttttaatttatagtaacaagtt 670
Query: 241 ataaggttgttctctagactgcattgaattctcctaatgaaatatccccttgtctgttca 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ataagattgttctctagactgcattgaattctcctaatgaaatatccccttgtctgttca 610
Query: 301 gcagtgagttaaggactactatagactttttttctactgttgaaaatgaacctaaaatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gcagtgagttaaggactactatagactttttttctactgttgaaaatgaacctaaaatga 550
Query: 361 aagactttcttttcccaatcattggggcttgttttaaagggaaccggtatgtctatgctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aagactttcttttcccaatcattggggcttgttttaaagggaaccggtatgtctatgctt 490
Query: 421 agatgttaatcaaccaacaatgtaatttccatttatgcacaacttgactcctcaggcttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agatgttaatcaaccaacaatgtaatttccatttatgcacaacttgactcctcaggcttt 430
Query: 481 tttccctttaattggaatgcctttaaagaacacaattgatgtaaatgaaaatagatacat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tttccctttaattggaatgcctttaaagaacacaattgatgtaaatgaaaatagatacat 370
Query: 541 ataaatttaagaggaagacattggatgattttataggttcatttacagcttgtgctttga 600
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 369 ataaatttaagaggaagacattggatgattttataggtccatttacagct-gtgctttga 311
Query: 601 ctccagcaacttatctgccttttcttttcttttctcttaatttttccccagatatgggct 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 310 ctccagcatcttatctgccttttcttttcttttctcttaatttttccccagatctgggct 251
Query: 661 tatagttcaaggataaaaatcacaagcttaatatgcacaagttctggatg 710
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tatagttcaaggataaaaatcacaagcttaatatgcacaagttctggatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1109
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1099
Effective search space: 769300
Effective search space used: 769300
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_e11.g1 MSMg01no304_e11.g1 CHROMAT_FILE:
MSMg01no304_e11.g1 PHD_FILE: MSMg01no304_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:42 2005
(794 letters)
>mm_chr13_89012873_89014065
Length = 1193
Score = 1394 bits (721), Expect = 0.0
Identities = 775/793 (97%), Gaps = 1/793 (0%)
Strand = Plus / Plus
Query: 2 tctctaatgaaatatataatttgttatatcataaattgaatctcagttatttaataagca 61
||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||
Sbjct: 202 tctctaatgaaatatataatttgttatatcataaattgaat-tcagttatttaacaacca 260
Query: 62 acaattgactgataacactctgttcaagttatgaatatttgtataaggcataaaatttaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaattgactgataacactctgttcaagttatgaatatttgtataaggcataaaatttaa 320
Query: 122 tttaaatctaaatatacaaattaattctactggtaaaggtaacttttatttaaaagtctg 181
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tttaaatctaaatatacaaattaatcctactggtaaaggtaacttttatttaaaagtcta 380
Query: 182 taaagctatttcataggcaactataaaaaggatagaaaagtaaataaacactagataagc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaagctatttcataggcaactataaaaaggatagaaaagtaaataaacactagataagc 440
Query: 242 agttataataaaggctgaaacacttatactttcctgtacttcacaaaattctagactagc 301
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 aattataataaaggctgaaacacttatactttcctgtgcttcacaaaattctagactagc 500
Query: 302 agtctttagtcatgtgcagttcatttctttcagctgcatagtattctatttccaggaatg 361
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 501 agtctttagtcatgtgcagttcatttctttcagctgcatggtattctatttctaggaatc 560
Query: 362 aaagtgtagataagttgacagagtgcatactcacaggactgttggaacctccaagtgagc 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagtgtagataagttgacagagtgcatactcacaggactgttggaacctccaagtgagg 620
Query: 422 cctattaatgtaaatgttaaaatgaatcaaaggtgaaataaaactgaaacaactagagaa 481
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctattaatgtaaatgttaaaataaatcaaaggtgaaataaaactgaaacaactagagaa 680
Query: 482 ttttattaacaacttttctcttttaaacgttgactaccgttttataaatttgcatctttg 541
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 681 ttttattaacaacttttctcttttaaacattgactaccgttttataaatttgcatctttg 740
Query: 542 tctatacaatggttttcttgactttgtttattaattgcagataaaggaagatagctgact 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctatacaatggttttcttgactttgtttattaattgcagataaaggaagatagctgact 800
Query: 602 aggacaaaatacactgtaaggctgctgatattgttcagtttctttctagtaataaacata 661
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aggacaaaatacattgtaaggctgctgatattgttcagtttctttctagtaataaacata 860
Query: 662 acttattgtatattagatgcacaactttaatttatgtaacatatatcatgcatactatga 721
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 861 acttattgtatattagatgcacaactttaatttatgtaacatatatcatgcatattatga 920
Query: 722 gagctataattacactaattatagtataataatgacacgaactaattttgtttctgttcc 781
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 921 gagctgtaattacactaattatagtataataattacacgaactaattttgtttctgttcc 980
Query: 782 tttttacttggaa 794
|| ||||||||||
Sbjct: 981 ttcttacttggaa 993
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 794
Length of database: 1193
Length adjustment: 10
Effective length of query: 784
Effective length of database: 1183
Effective search space: 927472
Effective search space used: 927472
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
