Query= MSMg01no304_j12.b1 MSMg01no304_j12.b1 CHROMAT_FILE:
MSMg01no304_j12.b1 PHD_FILE: MSMg01no304_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:27 2005
(830 letters)
>mm_chr13_96005238_96006468
Length = 1231
Score = 1268 bits (656), Expect = 0.0
Identities = 755/822 (91%), Gaps = 59/822 (7%)
Strand = Plus / Plus
Query: 14 gaatt-agcaaagaatccgaggccttt--aaacttctagaagtaaacatagatgtttaca 70
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 214 gaattcagcaaagaatccgaggc--ttagaaacttctagaagtaaacatagatgtttaca 271
Query: 71 aacgtgcatttggcaaagatcgcttagggggg-aaaaatgtaaaaggaatgtgtcacaga 129
|||||| | ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 272 aacgtggagttggcaaagatcgctta-ggggggaaaaatgtaaaaggaatgtgtcacaga 330
Query: 130 aaggaggaaaatgtgtctgggaggccaacagaagcttggcagtctgttcttgtaaagtgc 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aaggaggaaaatgtgtctgggaggccaacagaagcttggcagtctgttcttgtaaagtgc 390
Query: 190 ctttaagagaaggaaaggggggctggagagatggctcagcgcttaagagcactgactgct 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ctttaagagaaggaaaggggggctggagagatggctcagcgcttaagagcactgactgct 450
Query: 250 cttccagaggtcctgagttcaattcctagcaaccacatggtggctcacaaccatctgtaa 309
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 451 cttccagaggtcctgagttcaattcctagcaaccacatggcggctcacaaccatctgtaa 510
Query: 310 tggaatctgatgtcctcttctggtgtgcctgaagacagtgacagtggacacatataaatg 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tggaatctgatgtcctcttctggtgtgcctgaagacagtgacagtggacacatataaatg 570
Query: 370 aaataaatctttctttaaaaaagaaaagaaaacgggaagtcaatggactgggaggaaaat 429
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 571 aaataaatctttctttaaaaaagaaaagaaaacgagaagtcaatggactgggaggaaaat 630
Query: 430 atatctggggtacatttacctcacaggactagagataggtgtggggacagtggttctcag 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 631 atatctggggtacatttacctcacaggactagagataggtgtggggacagtggttgtcag 690
Query: 490 agagagagagagagagaaagagagagagagagagagagagagagagagagagagagagag 549
|||||||||||||||||
Sbjct: 691 agagagagagagagaga------------------------------------------- 707
Query: 550 agagagagagagagagatacaccacacacagagacacacatgtggacaggcacacacatt 609
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 -------gagagagagatacaccacacacagagacacacatgtggacaggcacacacatt 760
Query: 610 cctgcaagttgatagtcagaggataaaatctaactcaaaacaggatgcaatttttaaata 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 761 cctgcaagttgatagtcagaggataaaatctaactcaaaacaggatgcaatttttaa-ta 819
Query: 670 -tctcacaatatcagaaataaaaatggacattaatcatttggaaaatgttcactgtctgc 728
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 atctcacaagatcagaaataaaaatggacattaatcatttggaaaatgttcactgtctgc 879
Query: 729 catcaatgaagcaaatgaaccactgctgtggcgaaaatgcagttgttacatattctccta 788
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 880 catcaatgaagcaaatgaactactgctgtggcgaaaatgcagttgttacatattctccta 939
Query: 789 tatggctacttatattgtgcgttttcttggtaaatatacagc 830
||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 940 tatggctacttatattgtgcgttttcttgttaaatatacagc 981
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 830
Length of database: 1231
Length adjustment: 10
Effective length of query: 820
Effective length of database: 1221
Effective search space: 1001220
Effective search space used: 1001220
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_j12.g1 MSMg01no304_j12.g1 CHROMAT_FILE:
MSMg01no304_j12.g1 PHD_FILE: MSMg01no304_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:27 2005
(763 letters)
>mm_chr13_96047956_96049120
Length = 1165
Score = 1346 bits (696), Expect = 0.0
Identities = 739/768 (96%), Gaps = 26/768 (3%)
Strand = Plus / Minus
Query: 1 attgtctcagtatttatgatgcacattatctttgtgcacagtgggccctccgtttgtatt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1091 attgtctcagtatttatgatgcacattatctttgtgcacagtgggccctctgtttgtatt 1032
Query: 61 tatgcaatgaataaacagcattgtgaaatcacacacacacacacacacacacatata--t 118
||||||||||||||||||||||||||||| |||||||| |
Sbjct: 1031 tatgcaatgaataaacagcattgtgaaat--------------------cacatatatgt 992
Query: 119 atatatatatatatatgcttatatatcatgtacttatttagttttctgctttggatttta 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 atatatatatatatatgcttatatatcatgtacttatttagttttctgctttggatttta 932
Query: 179 gcaggtgaagccctgtctccagccatactttctttaataaaacattgtcagatttgctaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 gcaggtgaagccctgtctccagccatactttctttaataaaacattgtcagatttgctaa 872
Query: 239 tcagcttggtctccccgccccccctgtttttctcaacctttgtgccagcatttgggtgag 298
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 tcagcttggtctccccg-cccccctgtttttctcaacctttgtgccagcatttgggtgag 813
Query: 299 tttgacttgatacatttccaatctgtctgtgcaggaacaagatttgacattgttatggat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 tttgacttgatacatttccaatctgtctgtgcaggaacaagatttgacattgttatggat 753
Query: 359 ggtagccaaagagctctttcttaccgaggaaaaatatttcataattaaatgattaatagt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ggtagccaaagagctctttcttaccgaggaaaaatatttcataattaaatgattaatagt 693
Query: 419 tatagatacccttgactctcacaattccaagttgtacatttcaaagcgctggcaactgga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tatagatacccttgactctcacaattccaagttgtacatttcaaagcgctggcaactgga 633
Query: 479 ggctttggccaaactgggtcccacttctgatgttccttggcaccctcccaagttaccact 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ggctttggccaaactgggtcccacttctgatgttccttggcaccctcccaagttaccact 573
Query: 539 ggccctgtgtctctgtggacagttttgttgttgttg---gttgttttctgtatggcgaat 595
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 572 ggccctgtgtctctgtggacagttttgttgttgttgttggttgttttctgtatggcgaat 513
Query: 596 gacccacagccttgtcatcacctgagtttctatcagaatgtcttttcatttccaggtctt 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gacccacagccttgtcatcacctgagtttctatcagaatgtcttttcatttccaggtctt 453
Query: 656 gaatttgccaagcaaagtctccatgactaagctacttccctagcctttttctcttctgtc 715
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaatatgccaagcaaagtctccatgactaagctacttccctagcctttttctcttctgtc 393
Query: 716 tgatactgtcaaggtgctttctgtcttctcctctaggtgtgcattctc 763
|||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 392 tgatactgtcaaggtgctttctgtcttctcctctaggtgtgcgttctc 345
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 763
Length of database: 1165
Length adjustment: 10
Effective length of query: 753
Effective length of database: 1155
Effective search space: 869715
Effective search space used: 869715
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
