BAC Information

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BAC

Clone NameMSMg01-304K04
Chromosome13 (Build37)
Map Location 14,734,981 - 14,735,707
singlet/doubletsinglet
Overlap genenone
Upstream geneLyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1, Mrpl32, Psma2, AW209491
Downstream geneEG665099, LOC670994, EG625121, Gli3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304K04.T7 (MSMg01no304_k04.b1)MSMg01-304K04.TJ (MSMg01no304_k04.g1)
ACCAG429854AG429855
length1,3781,324
length of high quality
(start - end)		822 (92 - 913)729 (94 - 822)
definitionCHROMAT_FILE: MSMg01no304_k04.b1 PHD_FILE: MSMg01no304_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:32 2005CHROMAT_FILE: MSMg01no304_k04.g1 PHD_FILE: MSMg01no304_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCGGTCTNNNNNNNNTCAGTGGGCGCTATAGACTCCTAAGGGAGAGG
ATCCGCGGAATTCTCACCTGAGGAATACCCCATTAAAGAGAAGCACCTGA
AAAATGTTCAGCACCCTTAATCCTTAGGGAAATGCATTCAAAGCAGCCCT
GAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTG
ACAGCAGATGCTGGCAAGGATGTGCAGAAAGAGGAACACTCCTCCATTTT
TGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGAGGTT
CCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCC
TGGGCATTAATCCAGAAGATGTTCCAACTGGTAAGAAGGATACATGCTTC
ACTATGTTCATAGCAGCCTTATTCATAATAGCCAGAAGCTGGAAAGAGCC
CAGATGTCCCTCAAGAGAGGAATGGATACAGGAAATGTACATTGTTTACA
CAATGGAGTACTACTCAGCTAATAAAAAGAATGAATTTATGAAATTCCTA
GCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAATCCAATC
ACAAAAGAACTCACATGATATGTACTCACTGATAAGTGGATATTAACCCA
AAAACTTAGAATACCCAAGATACAAGATATAATCTGCAAAACACATGAAT
CTCAAGAAGAATGAAGACCAAAAAAATGTGGACACTTTGCCCCTTCTTAG
GATTGGGAACAAAACACTCATGGAAAGAGTTACAGAGACAAAGTTTGGAG
CTGAGGTGAAAGGATGGACCATTTAGACCCTGTTATACCTGGGGATCCAT
CCCATAATCAGCCTCCAAACACTGACACAATTGCATACACTAGCAAGATT
TTGCTGAAAGGACCCAGATATAGCTGTCTCTTGTGAGGCTATGCCGGGGC
CTAGCAAACACAGAAGTGGATGCTCACAGCCAGCTATTGGTTGGATCACA
GGGGCCCCCAGGGAGGATCTAAAAAAGTACCCACGGGGCTTAAGGGGTCT
GCAACCCTTTGGGGGGAAAATGATTTAAATAACCCGTACCCCCCCCCACC
TCTTGGTTCTTACTGCTATGGACCCCAAAATGGCTAACCCCCCTTATTTG
TAAAAAAGACCCCCGGTCTTTGAAACTTTATTGCCCCCAAAAGGGAAAGT
CAGGCCAAAAATGGAAGTGTGTGGGGGGGGGTGNNNNCNCATTCCTTNCA
TATTCATCTTCCTCACTTTATATCTATCATTCCCATCATAATTTTTTACT
TCTATTCTCTATCGTCAAATATACCCTACTTTNAAACTAATTGGTTTACT
CTTATACTGAATATTAACATAATATCAA

NNCCCCTGTATTTNNNNNACCAAGTGAGGCTGGGGCGCCXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAAGACCCCTACAGA
CTAAAGAGCAAGAGGAAAGAGACTCTTACTGTGAGAACTACAGAGAAGAT
TAATGCTGGGTGAATACACTATTTTGGTATTGAACAGGACTATTCTCCAA
GCCAAATCACTGCCATCAAGAGTTCTCATCCCAGCTAGGCTTCATGATTG
CTGATGTTTTCTCATAGGAGGAAGGAGCAAGGTAGGTCATGGGACTCTCA
TCCGAGTATCCATCCACACCTCCCAACCAGTTGTGTGCAATTCATGCATG
CCCTGATTGAATCTAGTCTTGGAGTCTCTGAGAGAGACTGGGGGAGGGGA
CTTTCTCTATACAGCCCTTAGGAAGGCATCATTCTTGGTGGGTACAGGCC
TTCTAACGTTGCTGCTTTAAGATCATCCAAAGCCACTGCCCATCACTCCT
CACTCATTGCTCTGTGAGTAAGTAAGCCTAATGAACTCATTGGTTTTCCA
ACGTAAACTGTGGTAGAATCTAAGTTAAGTTTGTCATTGGAACCTTGGTG
TGTGTGTGTCTGTGTCTATGTGTAGGGGATAAGGGGCATCTTTTTAGTCT
TCCTCAAAGTGAAAATTCTTGAAGCATATTAAAACATGATTTTCTTAGGA
ATATGAATTAGAATCAAGGAAGAAATATAAAACCAAAAGAAATAACTGAA
ATCATTTTTAAAGTAGCTAAGCACTTTTCCCCCCAAATGACCTGGTTTAG
TTAGCTTCATCAAGTAAGTTTTCAGTTTTTAATATCAAGTGAATTCTGTT
TTAAAAGTGATATGATGCACATCTTTTTTGNTTGTTTGNTTGTTTTTGGT
TTTTGNTGGCCTTTTTTTTTCAATTTATTAAAAAATATTCTCCCTTACAT
TTCAAAAGCTATCCTGAAGGAACCTATAACCTCCCCCCCTCTGTTTTCTT
ATCACCCATCCCACTTTTGGTTTTGGGTCCCCGGAAGGGGGATAAAATTT
TTAAAACCAAGGGCTCCCTTCCCCGATTTCTGAATAAGACCTTTTGTTTA
TTTTGCTTGAACCAAAATCGGGGGAGAGAAAGTATTATTGTTCTCCTAAG
GGTTGAACCCTTTTTCTGGGATTTTTCATTTCCTTTGTGGGGCCTCTCAA
TAAGTGAACCCTCTTTTTAGTGCTTTTCTAAACAATCTTCCTTCATCTTC
ATCATACTCGTGGCATTGAGCTCCCAAAGTTAACGGTCACTCCTCCATTT
ATNTACNNNNCATCATTACTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_k04.g1 MSMg01no304_k04.g1 CHROMAT_FILE:
MSMg01no304_k04.g1 PHD_FILE: MSMg01no304_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:33 2005
         (729 letters)



>mm_chr13_14734781_14735909
          Length = 1129

 Score = 1305 bits (675), Expect = 0.0
 Identities = 715/729 (98%), Gaps = 2/729 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacagactaaagagcaagaggaaagagactcttactgtgagaactacagagaagattaa 60
           |||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 201 ctacagaccaaagagcaagaggaaagagattcttactgtgagacctacagagaagattaa 260

                                                                       
Query: 61  tgctgggtgaatacactattttggtattgaacaggactattctccaagccaaatcactgc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctgggtgaatacactattttagtattgaacaggactattctccaagccaaatcactgc 320

                                                                       
Query: 121 catcaagagttctcatcccagctaggcttcatgattgctgatgttttctcataggaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcaagagttctcatcccagctaggcttcatgattgctgatgttttctcataggaggaa 380

                                                                       
Query: 181 ggagcaaggtaggtcatgggactctcatccgagtatccatccacacctcccaaccagttg 240
           |||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 381 ggagcaagataggtcatgggactctcacccgagtatccatccacacctcccagccagttg 440

                                                                       
Query: 241 tgtgcaattcatgcatgccctgattgaatctagtcttggagtctctgagagagactgggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgcaattcatgcatgccctgattgaatctagtcttggagtctctgagagagactgggg 500

                                                                       
Query: 301 gaggggactttctctatacagcccttaggaaggcatcattcttggtgggtacaggccttc 360
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggggactttctctatacagccataaggaaggcatcattcttggtgggtacaggccttc 560

                                                                       
Query: 361 taacgttgctgctttaagatcatccaaagccactgcccatcactcctcactcattgctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taacgttgctgctttaagatcatccaaagccactgcccatcactcctcactcattgctct 620

                                                                       
Query: 421 gtgagtaagtaagcctaatgaactcattggttttccaacgtaaactgtggtagaatctaa 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 gtgagtaagtaagcctaatgaactcattggttttccaacgtaaactgtggtagaatctga 680

                                                                       
Query: 481 gttaagtttgtcattggaaccttggtgtgtgtgtgtctgtgtctatgtgtaggggataag 540
           ||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||
Sbjct: 681 gttaagtttgtcattggaaccttggtgtgtgtgt--ctgtgtctgtgtgtaggggataag 738

                                                                       
Query: 541 gggcatctttttagtcttcctcaaagtgaaaattcttgaagcatattaaaacatgatttt 600
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 739 gggcatctttttagtcttcctcaaagtgaaaactcttgaagcatattaaaacatgatttt 798

                                                                       
Query: 601 cttaggaatatgaattagaatcaaggaagaaatataaaaccaaaagaaataactgaaatc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 cttaggaatatgaattagaatcaaggaagaaatataaaaccaaaagaaataactgaaatc 858

                                                                       
Query: 661 atttttaaagtagctaagcacttttccccccaaatgacctggtttagttagcttcatcaa 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 atttttaaagtagctaagcacttttccccccaaatgacctggtttagttagcttcatcaa 918

                    
Query: 721 gtaagtttt 729
           |||||||||
Sbjct: 919 gtaagtttt 927


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 729
Length of database: 1129
Length adjustment: 10
Effective length of query: 719
Effective length of database: 1119
Effective search space:   804561
Effective search space used:   804561
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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