BAC Information

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BAC

Clone NameMSMg01-304O19
Chromosome13 (Build37)
Map Location 16,618,487 - 16,619,131
singlet/doubletsinglet
Overlap genenone
Upstream geneGli3, LOC665157, Inhba, LOC625181
Downstream geneLOC665191, 5033411D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304O19.T7 (MSMg01no304_o19.b1)MSMg01-304O19.TJ (MSMg01no304_o19.g1)
ACCAG430058AG430059
length1,2591,340
length of high quality
(start - end)		756 (85 - 840)736 (89 - 824)
definitionCHROMAT_FILE: MSMg01no304_o19.b1 PHD_FILE: MSMg01no304_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:12 2005CHROMAT_FILE: MSMg01no304_o19.g1 PHD_FILE: MSMg01no304_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCCTTTTNNNNNNCCATTGGGCGCTAAGACTCCTAAGGGAGAGGATC
CGCGGAATTCCAAGATGGAGGAGAACACTTAGGCAAGAATACATTGACCA
AGATGGAAAGCCACTGCATAGGAATGCCTTTGCTCCAACTCATCAGCCAG
CTCTGACAGGGATAATTTTTTTGGTAGATCACTGAAAAATGAAAAGAATT
ATATGCAAATGTGACTAGGTACCACAGAGTATGCCTCTCTAGGACAGTAG
GCAAATAGCCAGAGACAGGAGAAATGAGTTGAGGAGAATGCTCTGTTGAA
GGACCTTACCATGTGTTCTCAGAAGTGTTCAGTGGCTTAGACTTTGAAAA
CTACAGTGTAGGAGACCTTCCTTGGATGAAGAAATCATGAACATTGTCCT
GAATAAATTCATACGTGATATCATCACCACTTCTTTTTTCTTTTATTAAT
TCATTAGTAACTGTCTACATGACTACATTTTTCTCACAGAATGTGAGACA
ACTTGTAAATATGATGTAAGAGGTTGCCTTATAGTTTCTATTGCTGTGAT
CAAACACCATGACTGAAAGCACCTTGAGAAAAAAAGTGTATATTTAACCT
TATCTTTTAAGTCCTTCACTGAGGGCAAGGACTCAGGGCAGAAACTAAAG
TTGAAGACATGGAGTTTCCTTACCAGCTCTCTCCCATGTCTTGAACAACC
TGTTTTCTGTTACCATCCAGGACCACCCACTCATGGTTGGCACAACACAC
AGTGGCCGAGGCCCTCCCACACCAAACAGTAATCAAGAAAATACCCTGTA
TATTTGCCTACAAGCCAATCTCAGGGAAGCATTTTCTCTATAAAGATTCT
TTCTTCTCAGATGATGCTAGCTTGTATCAAGTTGACAAAAAAATTAACCA
GCACAATTGAGCCCTTATCATCTTTGAATACCCCTCCTTTTTATACCCCA
AGGCTGCCTTTCTTTTTATACCCCCAAGTCGGGGTGGTATTATTAAAACA
AAAAAAAAAATTCCCAATTTAAAACCCTCCCCCTTAAAAAACCCCCTTTT
AATTGGGAAACTTGAAAAATCAGTCCTCTTTAAAAATCCAAAACCCCTTT
TTAATTTAAAGTTTCTCTAAAAAACCAAAAGCTTTTCTAAATCCCAACTC
CCTTCTAAATAAAAGACTCCCTCGGGGGTCTTGGTTGCCAATAAATTAAT
ATTTCTTATTCCAAAAATACCGGGGTAATCAAATCCAAAAAAAAGCCACC
CAACGTGTC

NNCCCATGCCTTTNNNNNATCATGGAGNCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCAACTGAGGAATACCGA
ATGGCAGAGAAGCACCTGAACATATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAA
AGAGGAACTCTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTCAGGAAATTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACT
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTATCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCAC
TGATAAGTGGATATTAGCCCAAAACCTAGGATACCAAAGATATAAGATAC
AATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTAAAGTTTGGAC
ACTATGCCCCTCCTTAGAAGTGGGAACAAAACACCCTTGGAAGGAGCTAC
AGAGACAAAGTTTGGAGCTGAGATGAAAGGATGGTCCATGTAGAGACTTC
CATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTG
CGTACACTAGCAAGAATTATTCTAAGGAACCCCATGTAACTGTCTCTTTG
TGAAATATGCCGGGGCCCAACAAACAAAAAAAGGAAGCCCCCCCGCCCCT
AATGTATGAATAACGGGGCTCCCCGGGGGAGTTAAAAAAAAATACCAAGG
ACTAAGGGATTGTCCCCCTTTAGCGGGAAAACATATTGAATAACAATACC
CGGAACCCCTTTTCTATTTGTTTTGTTTCAAAAAGGGCAAACGGCCCCCT
GGAAAAAAGCCTTGGATTGTCAATTATTTCCCCATCCGGAAACAGGGCAA
AGGGGAGGGGGGGAGAATGTNTTTTTANNATTATTTTCTTCAACTCATTA
NCCTACATTNAATTGTAATTCTTANATATAAATCTATACTTAATATTTGA
ACNTTTTTACATCTATTCTACTGAACACTACATCCATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_o19.b1 MSMg01no304_o19.b1 CHROMAT_FILE:
MSMg01no304_o19.b1 PHD_FILE: MSMg01no304_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:12 2005
         (756 letters)



>mm_chr13_16618487_16619643
          Length = 1157

 Score = 1208 bits (625), Expect = 0.0
 Identities = 640/645 (99%), Gaps = 1/645 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaatacattgaccaagatggaaagccactgcataggaatgcctttgctccaactcatc 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 645 aagaatacattgaccaagatggaaagccactggataggaatgcctttgctccaactcatc 586

                                                                       
Query: 61  agccagctctgacagggataatttttttggtagatcactgaaaaatgaaaagaattatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 agccagctctgacagggataatttttttggtagatcactgaaaaatgaaaagaattatat 526

                                                                       
Query: 121 gcaaatgtgactaggtaccacagagtatgcctctctaggacagtaggcaaatagccagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gcaaatgtgactaggtaccacagagtatgcctctctaggacagtaggcaaatagccagag 466

                                                                       
Query: 181 acaggagaaatgagttgaggagaatgctctgttgaaggaccttaccatgtgttctcagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 acaggagaaatgagttgaggagaatgctctgttgaaggaccttaccatgtgttctcagaa 406

                                                                       
Query: 241 gtgttcagtggcttagactttgaaaactacagtgtaggagaccttccttggatgaagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gtgttcagtggcttagactttgaaaactacagtgtaggagaccttccttggatgaagaaa 346

                                                                       
Query: 301 tcatgaacattgtcctgaataaattcatacgtgatatcatcaccacttctttttt-cttt 359
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 345 tcatgaacattgtcctgaataaattcatatgtgatatcatcaccacttctttttttcttt 286

                                                                       
Query: 360 tattaattcattagtaactgtctacatgactacatttttctcacagaatgtgagacaact 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tattaattcattagtaactgtctacatgactacatttttctcacagaatgtgagacaact 226

                                                                       
Query: 420 tgtaaatatgatgtaagaggttgccttatagtttctattgctgtgatcaaacaccatgac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tgtaaatatgatgtaagaggttgccttatagtttctattgctgtgatcaaacaccatgac 166

                                                                       
Query: 480 tgaaagcaccttgagaaaaaaagtgtatatttaaccttatcttttaagtccttcactgag 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tgaaagcaccttgagaaaaaaagtgtatatttaaccttatcttttaagtccttcactgag 106

                                                                       
Query: 540 ggcaaggactcagggcagaaactaaagttgaagacatggagtttccttaccagctctctc 599
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 105 ggcaaggactcagagcagaaactaaagttgaagacatggagtttccttaccagctcgctc 46

                                                        
Query: 600 ccatgtcttgaacaacctgttttctgttaccatccaggaccaccc 644
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  ccatgtcttgaacaacctgttttctgttaccatccaggaccaccc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 756
Length of database: 1157
Length adjustment: 10
Effective length of query: 746
Effective length of database: 1147
Effective search space:   855662
Effective search space used:   855662
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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