Query= MSMg01no305_l22.b1 MSMg01no305_l22.b1 CHROMAT_FILE:
MSMg01no305_l22.b1 PHD_FILE: MSMg01no305_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:04 2005
(392 letters)
>mm_chr13_59270126_59270917
Length = 792
Score = 644 bits (333), Expect = 0.0
Identities = 367/392 (93%), Gaps = 21/392 (5%)
Strand = Plus / Minus
Query: 1 ccctcagaagcatccttgatggaattccatgggagggcctgggagccctcatggccccct 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 688 ccctcagaagcatccttgatgggcttccatgggagggcctgggagccctcatggccccct 629
Query: 61 ttcctaaagtttttctttctcaaggaagaagagatgtcatcctgtgactgacagacatca 120
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttcctaaagtttttctttctcaaggaagaagagatgtcatcctgtg-------------- 583
Query: 121 tcctgtaactgacagacatcatcctgtgattgacagacataaacctgtaattgacagaca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 -------actgacagacatcatcctgtgattgacagacataaacctgtaattgacagaca 530
Query: 181 tcatcctgtgactgacaaatcttccaagcctgaaagtagcctcctctggccatatagtta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tcatcctgtgactgacaaatcttccaagcctgaaagtagcctcctctggccatatagtta 470
Query: 241 gggggggtgctgaacagaatacagcagctgtggagactggacagcagacattgatttctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gggggggtgctgaacagaatacagcagctgtggagactggacagcagacattgatttctc 410
Query: 301 acttttctgggccctcagaggttggaatactggcttccttggtgtctggngaggtccatc 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 409 acttttctgggccctcagaggttggaatactggcttccttggtgtctggggaggtccatc 350
Query: 361 tctctagtttgcatcttcaagttttcctcgtg 392
||||||||| ||||||||||||||||||||||
Sbjct: 349 tctctagttagcatcttcaagttttcctcgtg 318
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space: 299889
Effective search space used: 299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no305_l22.g1 MSMg01no305_l22.g1 CHROMAT_FILE:
MSMg01no305_l22.g1 PHD_FILE: MSMg01no305_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:04 2005
(452 letters)
>mm_chr13_59143621_59144472
Length = 852
Score = 812 bits (420), Expect = 0.0
Identities = 444/452 (98%)
Strand = Plus / Plus
Query: 1 cattggatgaatgagagggcggtcgtaggggagtgggttggaacagaccgtggaaataga 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 cattggatgaatgagagggcggtcgtaggggagtgggtcggaacagaccgtggaaataga 260
Query: 61 attctgatgtgcttgagttaaccatcacatttacttctggacaacaaagtggcttcttga 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 attctgatgtgcttgagttaaccatcgcatttacttctggacaacaaagtggcttcttga 320
Query: 121 aactctgatggtcacagctgaaggaaactgtaaagatgacatataatattattaatctaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 aactctgatggtcacagctgaaggaaactgtaaagatgacatataatattaataatctaa 380
Query: 181 tgtaatgagaaatcgttttagaaatggttgaatcagctaggtatagtggcatgcgcttaa 240
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 381 tgtaatgagaaatcgttttagaaatggttgaataagctaggtatactggcatgcgcttaa 440
Query: 241 cagtccccacacttgacagatgcaggcagtagaaggatccagtactgaagtccaccttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtccccacacttgacagatgcaggcagtagaaggatccagtactgaagtccaccttca 500
Query: 301 gccgtgtagtgactctgaaaccaagtgggctacatgggaaagggaaagtatggatgcgta 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 gccgtgtagtgactctgaaaccaagtgggctacattggaaagggaaagtatggatgcgta 560
Query: 361 gttatgatgtagatatggactgctgttacggatgttctttagctaacaattattattatt 420
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 561 gttatgatgtagatatggactgccgttacggatgttctttagctaacatttattattatt 620
Query: 421 attattattattattattattattattattat 452
||||||||||||||||||||||||||||||||
Sbjct: 621 attattattattattattattattattattat 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
