BAC Information

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BAC

Clone NameMSMg01-307G07
Chromosome13 (Build37)
Map Location 7,149,560 - 7,149,829
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
Downstream geneLOC667611, EG623516, LOC791083, LOC382722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307G07.T7 (MSMg01no307_g07.b1)MSMg01-307G07.TJ (MSMg01no307_g07.g1)
ACCAG431774AG431775
length734745
length of high quality
(start - end)
272 (43 - 314)246 (72 - 317)
definitionCHROMAT_FILE: MSMg01no307_g07.b1 PHD_FILE: MSMg01no307_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:26 2005CHROMAT_FILE: MSMg01no307_g07.g1 PHD_FILE: MSMg01no307_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGAGAATGCGCGGAATTC
AATGAATTTACATCAAGCATGGGAAAAGACACAGCTTATAGTCCAATAAC
CATATAATTAATCATCTAACCCAAGACAACTCAGAGAACAAAAGAGAAAG
TTATTTTAAAAAAGTATTGCCAAGACAAGACAAGCTGATGTTACCTAGGT
GTTTTAGTCAACTGCACAGAATACCTAAGATGATCAAGAGTCAGTTTGTC
TTGGGTCAGTGATTCAGACTGTGTTCAGTTAGTCTTACTGCCTTTGGATC
TACTGTGTGGCAGCTCTTCTTGGTAGGATCATGTGGGGGACCAAGCTCCT
CAACTTATATAATGGAACCGACAACAAAAAGTGACAGGAGTCCACAATCC
CTTTGGAAGGCCCCCCCCTCAATGACATAAATACCTCCTCCTAGACTGCA
TCACTAATAGGAGCTATCACCTCTAAATAGCTTCATAGAATGAGGACCAC
ACCTTTCATTTGTGGACCACTTGGGACACATACAAGATTCCCACTGTATC
ACTCAGGTTTCTTATGGAAGACCACTATATTTGTCTTGGTCTTCTGTAGG
CTCACCCAACTCCGTTTCCATTGTCATCTTTTCTGTATCCTGAATATTTG
ATCATTTTCCTCACTGTGGCCTGCATTAAATATAAGATTGAAATAGCATG
CCCCCTAATCCCTACCCTCCCTCTCATAGTTTCT
CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTAACAAAAATATACTCCTAGTCACTCCCATTCTCGGGGTGT
AATAGTGGGGTGATGGGCAAGCAATGAATCAGGAGCTGTCACGCCATATC
AGGTGCTGAAACGTCACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCG
GTTCGGAATCTTCCTGAGAAGCAAGCAATAAAGCTCTTGCTGCGGAAGAT
TCTGGTTTGTTGCGTCTTTCTTGCCGGTCGAGCGGGACGCAATACAAACA
CAGTAAAACCTGGAATTTTTGGTTACATGGNACGTGTTAAGAAACTAAAA
GTACCCTTATTTCTGACACCCCCCCCCCCCCCATAGGTGGAACAATAATA
TGAACTAACCAGTACCCCCATGGCTCCCAAGAACTAAACCACCTACCAAA
GAAAACACATGGTGAGACTCATGCCTCCAAGTGCATATGTAGCAGAGGAT
GGCCTACTCAGTCATTAATGTGAGGAGAGATGCTTGGCCCTGTAAACTCT
CTATGCCCCAGTATAGGGGAATTCCAGGGCCAGGAAGTATGACTATGCGG
GCTGTTGAGCCTTGTTACAGGGAGGGTTATAGGTCCTCCCCCCCCCTATT
TCCCCTTTTTCTTTCCTTCTTTTCCCTTTCGCTTTCTTTTTTTCCCCTCC
TCCTTCCCACTCTTCTCCTTCCTATATTTCTCCCTTTTCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_g07.b1 MSMg01no307_g07.b1 CHROMAT_FILE:
MSMg01no307_g07.b1 PHD_FILE: MSMg01no307_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:26 2005
         (272 letters)



>mm_chr13_7149358_7150029
          Length = 672

 Score =  514 bits (266), Expect = e-150
 Identities = 269/270 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcaatgaatttacatcaagcatgggaaaagacacagcttatagtccaataaccata 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcaatgaatttacatcaagcatgggaaaagacacagcttatagtccaataaccata 262

                                                                       
Query: 63  taattaatcatctaacccaagacaactcagagaacaaaagagaaagttattttaaaaaag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taattaatcatctaacccaagacaactcagagaacaaaagagaaagttattttaaaaaag 322

                                                                       
Query: 123 tattgccaagacaagacaagctgatgttacctaggtgttttagtcaactgcacagaatac 182
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 323 tattgccaagacaagacaagctgatgttaactaggtgttttagtcaactgcacagaatac 382

                                                                       
Query: 183 ctaagatgatcaagagtcagtttgtcttgggtcagtgattcagactgtgttcagttagtc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctaagatgatcaagagtcagtttgtcttgggtcagtgattcagactgtgttcagttagtc 442

                                         
Query: 243 ttactgcctttggatctactgtgtggcagc 272
           ||||||||||||||||||||||||||||||
Sbjct: 443 ttactgcctttggatctactgtgtggcagc 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)