BAC Information

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BAC

Clone NameMSMg01-307G15
Chromosome13 (Build37)
Map Location 67,617,807 - 67,618,098
singlet/doubletsinglet
Overlap geneZfp87
Upstream geneC330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817
Downstream geneZfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307G15.T7 (MSMg01no307_g15.b1)MSMg01-307G15.TJ (MSMg01no307_g15.g1)
ACCAG431787AG431788
length740753
length of high quality
(start - end)
292 (417 - 708)249 (427 - 675)
definitionCHROMAT_FILE: MSMg01no307_g15.b1 PHD_FILE: MSMg01no307_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:28 2005CHROMAT_FILE: MSMg01no307_g15.g1 PHD_FILE: MSMg01no307_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:28 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCA
TACTGGTACCCAACCCTACCAGTGTGAAGAGTGTGGGAAAACATTCTACT
ATCGTTCAAACCTGAAGGGACATCAGATTATTCATTCTGGAGTGAAACCC
TACAAGTGTGAAGTATGTGGGAGCATGTTTAGAACTAGCTCAGACCTTTC
TAAGCACCAGAGGATCCATGCGGAAGTGAAGCTGTACAGTTGTGAGGAGT
GCGGGAAAGCCTTTTCTACTCATTCGTACCTCATTCGGCACAAATTGGGC
CACTCTAGAGAGAATCTTACAAATGCGAAGAGTGTGGCAAAACATTTTGT
TATCCTTCAATCCTTAAGGAACATCAACGAATTCATTCTGGAGTGAAACC
TTACAATTGCCCCACATGTGGCAGCATGTTTAGAACTCGCTCCGAACTTT
CTAAGCACCAGAGAATCCATGCTGAAGTGAAGCTCTACAACTGTGAGGAG
TGCGGGAAAGCCTTTTCTACTCACTCCTACCTTATGAGGCATAGACTTGG
TCACTCTGGAGAGAAGCCCTACAAATGTGAAGAGTGTGGGAAATCCTATA
GCTACCCTTCACTCCTTAAGGAACATCAAAGAATTCATTCTCAGAATCCC
TATAAGTGTGACGTGTGTGGGAAGGTTTTTTGTACTCGCTCAGGACGTTC
TAAACACCAGAGAATTCACACCGGAGAGAAACCTTACAAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCGTCTCTCATGTGAGCCTGTCA
TCGTTCATATTTGGCAATATTTGACCATCAGTGGTATCCGCCTTGAACTT
CCGTTATTTCTCCGAAACAGAACACCGAGATAATTCCTTCTTGAATACAA
AGGTATCAGAAATATGTTCATAGCATTGCCAAATGAGGTCGGTATATTAA
AGAAGTTACACTGGAAACATACAATATTGAGAATTCCCATCTCTTCTTGG
GAAGGTTTATTCCTGTGAAGTTCTTGCTTGAGTCAAAGTTACAAACCCCA
TTGCAGAAAAGGCTTCATACTTCCCTGCATCACTTATGATTCAAAAGGAA
GCTGTTTCAGAGCAAAGACCGCCCACAGTCCCTATTGAGTTCTTTGTCAG
GGAGTGTGTTTACCTATGGATGCAGAACACCTTCCTCGATTTAGAGAAAC
TAGAGTCAAGAAGCAGTACATTCACCTGGACACTTGATTGGCATGTCTGT
TTAGAATGAGGTCATGAGTGGTCTGTCCTCCCCCTGAATATTGCAGTGGA
AGGCATTGTCAGCAACCACAAGGACAGAATTTCTGAGCATAGCAAGTTTT
CTAATATGTGTATGTGTTGAGGTTCGGTGTGTTGCTATGTTTTGTTATGC
TAAATTCTCTACTCAAAGGTCTAGACTCTCTACTGACTTCTCACATTTAC
AAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_g15.b1 MSMg01no307_g15.b1 CHROMAT_FILE:
MSMg01no307_g15.b1 PHD_FILE: MSMg01no307_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:28 2005
         (292 letters)



>mm_chr13_67617607_67618298
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggcagcatgtttagaactcgctccgaactttctaagcaccagagaatccatgctgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tgtggcagcatgtttagaactcgctccgaactttctaagcaccagagaatccatgctgaa 433

                                                                       
Query: 61  gtgaagctctacaactgtgaggagtgcgggaaagccttttctactcactcctaccttatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gtgaagctctacaactgtgaggagtgcgggaaagccttttctactcactcctaccttatg 373

                                                                       
Query: 121 aggcatagacttggtcactctggagagaagccctacaaatgtgaagagtgtgggaaatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aggcatagacttggtcactctggagagaagccctacaaatgtgaagagtgtgggaaatcc 313

                                                                       
Query: 181 tatagctacccttcactccttaaggaacatcaaagaattcattctcagaatccctataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tatagctacccttcactccttaaggaacatcaaagaattcattctcagaatccctataag 253

                                                               
Query: 241 tgtgacgtgtgtgggaaggttttttgtactcgctcaggacgttctaaacacc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgtgacgtgtgtgggaaggttttttgtactcgctcaggacgttctaaacacc 201



 Score =  128 bits (66), Expect = 5e-34
 Identities = 147/174 (84%), Gaps = 2/174 (1%)
 Strand = Plus / Minus

                                                                       
Query: 53  atgctgaagtgaagctctacaactgtgaggagtgcgggaaagccttttctactcactcct 112
           |||| ||||||||||| ||||  |||||||||||||||||||||||||||||||| || |
Sbjct: 692 atgcggaagtgaagctgtacagttgtgaggagtgcgggaaagccttttctactcattcgt 633

                                                                       
Query: 113 accttatgaggcatagacttggtc-actctggagagaagccctacaaatgtgaagagtgt 171
           |||| ||  |||| | | |||| | ||||| ||||||| || |||||||| |||||||||
Sbjct: 632 acctcattcggcacaaa-ttgggccactctagagagaaaccatacaaatgcgaagagtgt 574

                                                                 
Query: 172 gggaaatcctatagctacccttcactccttaaggaacatcaaagaattcattct 225
           || ||| | | | | || |||||| ||||||||||||||||| |||||||||||
Sbjct: 573 ggcaaaacattttgttatccttcaatccttaaggaacatcaacgaattcattct 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)