BAC Information

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BAC

Clone NameMSMg01-308H07
Chromosome13 (Build37)
Map Location 76,202,834 - 76,203,084
singlet/doubletsinglet
Overlap geneArsk
Upstream genePcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150
Downstream geneAK129128, Gm276, Mctp1, LOC666603, EG666607, Ankrd32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308H07.T7 (MSMg01no308_h07.b1)MSMg01-308H07.TJ (MSMg01no308_h07.g1)
ACCAG432532AG432533
length686709
length of high quality
(start - end)
272 (21 - 292)245 (57 - 301)
definitionCHROMAT_FILE: MSMg01no308_h07.b1 PHD_FILE: MSMg01no308_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:47 2005CHROMAT_FILE: MSMg01no308_h07.g1 PHD_FILE: MSMg01no308_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATCTCCAAACCCAGAGTAG
AAGGGGAGAAGTGATTTCTTAATCTTCACAGGTAAGCATTATCAGATGTC
ATACTGACACATGCATACACACACAGAGACTCACATACACATATACACAC
ACTGGCACTCATACACACTAACACACACACAGAGTTTGTTTTTTTCTGTA
AGTAACTCAGAGATCAATAGAATAACATCGTGAAGATGTGACATTCTTTT
TCCTTTGCCCCAATTTAATTTATTTTTAAATATTATTTTGGATTCTTATC
CCAGGGACTGTTCCCAGGCTAACCATATTCTCTATCGTTTATTGCCCCCC
CCCCCCTTTTATTGCCCTCTGTCTCTCTTTCTTTATGCCCCCACCCCCAA
AAAAAAATCTCTGTCTCTCTCTGTGTCTTTCTCCATGTGTTGAGCCAGAG
TCCTGCTGTATTACTAATGAGAGCTGAAATGACTAATTTCCCATTTGCTC
CTCTCAAGGACCTGGATGTATGGGTACTTGTTAGTACATGCCACTGTCTT
CAATACTTTTTAATCCTTCATCCTCAATCTTAAGCAGCATCCTCAGGACA
TGGTCTTGTTTCACCTTGAAATGTCTAATATCTGTGTAAAAATCTGAAAA
CTATTTTGCTTACCTGACATCAACTCCGGCTAAAAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACTCAGAATCCAAGGTGGACGGTGGAATTTGAATGCCTGTTCAT
TTGCAGATGCATTTGACAACAGCGTCAACAAGGAGTATCCACTCAGATTT
GGAGGCAGAGCAATCCCAGCAATGTCTTCAAAACAAAAGGAAAGTGTTTT
TATTATTATTATTATTATTATTATTATTATTATTATATTATTATTATTAT
TATATTTTGTTCATTTTTGTGTTAACTCTTTTTGAAATTATTTGAACATT
CTTATTTCCATCCCATCACTACGGGTTGCAGAACGGAGATTACATGCATT
CCAAGCCGAAACCCCTATATTGATGTGTTTANATTATGTTCTTGTTCCCC
CCACAAAAAAAAAAAATCCGGTGAGGGGGGGGGCATCCCTGTCACATACG
TCCACTTCCCCATTAGTACCCTTATCTGATAAGATTAGTCTTGGTGACCG
TTTTTCTCCTTTGCATTTTTATTCCCCCGGTCTGTTCTTTCCCCCCCTCT
TCCTTCTATTCCCCGTTCTCTTTAGTCCTTACTGCCCCTCCATATTGCGC
TTCCTCTATAGTTCGCCTTCCTTTCCCTTCCCCCCCAGCCATTTCTTTAT
ACCCCCATTTCCCGTTTTTATTCACCTGAGTATTTCCGCCCCCTACACCC
TTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_h07.g1 MSMg01no308_h07.g1 CHROMAT_FILE:
MSMg01no308_h07.g1 PHD_FILE: MSMg01no308_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:47 2005
         (245 letters)



>mm_chr13_76202634_76203278
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 244/251 (97%), Gaps = 6/251 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcagaatccaaggtggacggtggaatttgaatgcctgttcatttgcagatgcatttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcagaatccaaggtggacggtggaatttgaatgcctgttcatttgcagatgcatttga 260

                                                                       
Query: 61  caacagcgtcaacaaggagtatccactcagatttggaggcagagcaatcccagcaatgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacagcgtcaacaaggagtatccactcagatttggaggcagagcaatcccagcaatgtc 320

                                                                       
Query: 121 ttcaaaacaaaaggaaagtgtttttattattattattattattattattattattattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaaaacaaaaggaaagtgtttttattattattattattattattattattattattat 380

                                                                       
Query: 181 ------attattattattattatattttgttcatttttgtgttaactctttttgaaatta 234
                 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 tattatattattattattattatattttgttcatttttgtgttaattctttttgaaatta 440

                      
Query: 235 tttgaacattc 245
           |||||||||||
Sbjct: 441 tttgaacattc 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)