BAC Information

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BAC

Clone NameMSMg01-309O20
Chromosome13 (Build37)
Map Location 20,089,164 - 20,089,790
singlet/doubletsinglet
Overlap genenone
Upstream geneAmph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309O20.T7 (MSMg01no309_o20.b1)MSMg01-309O20.TJ (MSMg01no309_o20.g1)
ACCAG433577AG433578
length743726
length of high quality
(start - end)
670 (46 - 715)595 (77 - 671)
definitionCHROMAT_FILE: MSMg01no309_o20.b1 PHD_FILE: MSMg01no309_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:38 2005CHROMAT_FILE: MSMg01no309_o20.g1 PHD_FILE: MSMg01no309_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACATTTCGATTGGCAGGCAGCAGAATGAGAGAAAAAAGAGAGCC
ACTGGACCTGGCTTGAGCTGCTGAAATGCCAAAGTCCACCCCCCCAGTGA
CCACTTCCTTCAACAAGGCCACACCTACTCCAACAAAGGTGGCTTTGTTA
GTGCGACTCTATGTCAATCAGGCATTTAAATCTATGAGCTTATGGGGGTG
GGTGTGGGGCATGCCTATTCAAATCACCACACTATTGAAAGCCAATCTTT
CCTGTAAATAGAGCTAGCCACTCCACATGATTGATTCCAACTCATGGAAT
CAATGTGGGTAGAAAAAATGGAATTAAAAGGTAATGAACGATTTCAAGTG
CTCCAAACACCAAATAAAATGTTTCATAAAGTACAAATGATTCTTGACAC
AGTGGGGACAACACATAATCAGTAAGGAGTAGGATAATGCATGCAAAGGA
TTTCTTTATTTGGTTGGTTGGGCTGATTATTTTATTTCATTTTATTAGCC
CAGACTATGTTCTTGATTGTTTCAATTTTAAGTATAATAATCCTACTGTA
TATCACATGTAAATGTTATGTCACATGTAGAGGACAAACAAAACAAAACA
ACAGCAAAAAACAACCCAGAAGTCAGAGTCAAATCATGATAGATAATAGG
TTTGGTACTACCTGAGAGTTTCTTCTTTAATAGCCTTATCACN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAATGTGGACTCCAGAAAATCA
AATAACCCCATTAAAAATGGGGCTCACAGCTAAACAAAGAATTCTCACCT
GAGGAATACCGAATGGCTGAGAAACACCTGAAAAAATGTTCAGCACCCTT
AATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACAC
AAATCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGAAA
GGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCT
TTTGCAACCACTCTGGAAATCAGTCTGACGGTTCCTCAGAAAATTGGACA
TGATACTACTGGTGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAA
AATGTTCCAAATGGTAAGAAGGACACATGCTCCACTATGTTCGTAGCAGC
CTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAG
AGGAATGGATACAGAANATGTGGTACATTTACACAATGGAGTACTACTCA
GCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGTTGGACCT
GGAGGGCATTATCCTGAGTGNAGTAAACCCATCACAAAAGAACTCAAATG
ATATGTACTCACTGAGAAGTGGATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_o20.b1 MSMg01no309_o20.b1 CHROMAT_FILE:
MSMg01no309_o20.b1 PHD_FILE: MSMg01no309_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:38 2005
         (670 letters)



>mm_chr13_20088728_20089791
          Length = 1064

 Score = 1143 bits (591), Expect = 0.0
 Identities = 622/635 (97%), Gaps = 8/635 (1%)
 Strand = Plus / Minus

                                                                        
Query: 36   atgagagaaaaaagagagccactggacctggcttgagctgctgaaatgccaaagtccacc 95
            ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 1063 atgagag-aaaaagagagccactggacctggcttgagctgctgaaatgtcaaagtcca-c 1006

                                                                        
Query: 96   cccccagtgaccacttccttcaacaaggccacacctactccaacaaaggtggctttgtta 155
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 cccccagtgaccacttccttcaacaaggccacacctactccaacaaaggtggctttgtta 946

                                                                        
Query: 156  gtgcgactctatgtcaatcaggcatttaaatctatgagcttatgggggtgggtgtggggc 215
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945  gtgcgactctttgtcaatcaggcatttaaatctatgagcttatgggggtgggtgtggggc 886

                                                                        
Query: 216  atgcctattcaaatcaccacactattgaaagccaatctttcctgtaaatagagctagcca 275
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 885  atgcctattcaaatcaccacactattgaaagccagtctttcctgtaaatagagctagcca 826

                                                                        
Query: 276  ctccacatgattgattccaactcatggaatcaatgtgggtagaaaaaatggaattaaaag 335
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825  ctccacatgattgattccaactcatggaatcaatgtgggtagaaaaaatggaattaaaag 766

                                                                        
Query: 336  gtaatgaacgatttcaagtgctccaaacaccaaataaaatgtttcataaagtacaaatga 395
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765  gtaatgaatgatttcaagtgctccaaacaccaaataaaatgtttcataaagtacaaatga 706

                                                                        
Query: 396  ttcttgacacagtggggacaacacataatcagtaaggagtaggataatgcatgcaaagga 455
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 705  ttcttgacacagtggggacaacatataatcagtaaggagtaggataatgcatgcaaagga 646

                                                                        
Query: 456  tttctttatttggttggttgggctgattattttatttcattttattagcccagactatgt 515
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645  tttctttatttggttggttgggctgattattttatttcattttattagcccagactatgt 586

                                                                        
Query: 516  tcttgattgtttcaattttaagtataataatcctactgtatatcacatgtaaatgttatg 575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585  tcttgattgtttcaattttaagtataataatcctactgtatatcacatgtaaatgttatg 526

                                                                        
Query: 576  tcacatgtagaggacaaacaaaacaaaacaacagcaaaaaacaacccagaagtcagagtc 635
            |||||||||||||||     ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 525  tcacatgtagaggac-----aaacaaaacaacagc-aaaaacaacccagaagtcagagtc 472

                                               
Query: 636  aaatcatgatagataataggtttggtactacctga 670
            |||||||||||||||||||||||||||||||||||
Sbjct: 471  aaatcatgatagataataggtttggtactacctga 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1064
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1054
Effective search space:   695640
Effective search space used:   695640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)