BAC Information

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BAC

Clone NameMSMg01-309O22
Chromosome13 (Build37)
Map Location 54,989,492 - 55,161,309
singlet/doubletdoublet
Overlap geneUnc5a, Hk3, Uimc1
Upstream geneE130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17
Downstream geneLOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309O22.T7 (MSMg01no309_o22.b1)MSMg01-309O22.TJ (MSMg01no309_o22.g1)
ACCAG433581AG433582
length848744
length of high quality
(start - end)		191 (69 - 259)633 (75 - 707)
definitionCHROMAT_FILE: MSMg01no309_o22.b1 PHD_FILE: MSMg01no309_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:38 2005CHROMAT_FILE: MSMg01no309_o22.g1 PHD_FILE: MSMg01no309_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,161,124 - 55,161,309)(54,989,492 - 54,990,124)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGACCTAATTGCACTTGTGAAATGTTTATGTATTTTCAAAACGTTG
GGCTGTTCTCAGGTCACCTTCATCATTAAGCATTGCCCTTTACTAGTCAG
TTTTGATATGAGTTATTATGAGTTTGGGAACTGAATTTTTGTGCAGTTCT
GTGATTGGGATAGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTT
TTGTTTTGCCTTCTTCTTTCCCCCTTTCCCCCTCTCTCTCCCTTCCCTCT
TTCCTCCCCTCCCTCCCTTTTTTTTTTTTTTTCTNCCCCTCTTTTNCCCC
CCCCCNNNNCAAAATTTTTTTTTTTCTTTCCCCCCCCCCCCCCCCCCCAA
TTAATTTTATTTTTAAAATAAAAAAAATAAGCCCCCCCCCCCCCCAAAAA
AAAAAAAAAAAATTTTTCTGGGGGGCGGGGCGCGGTTTCTCACCTTATTT
CCACATCTATATCTCCTTTATTTTCTCAACTCTTCCCATCTCCCCTTCTA
TAATTTTATATTCAACAAACGACTTCCCCTTTTCCCCTCCTCTCACTTTT
TATTTCATCCCATTCACTTATTTCTATTTTCCTCCTTCTTATTCCCCTAC
TCTCCTTTTACCATTTTTTTTTCCTCCCCCCCCGCCCCTTATCTATTTAT
TTTCCCTCTTTTCCCCTTCTTTTCTATTTTCTCCCTTTTCCACTTCCTCT
CCCCACCACCCCTTCTTCCTTTCCTTTATTCTTACCCCTCTTTTCACCAC
CTATTTACTTACTCTCCCCCCTCCGTATTTTCCTTTCTCGTCCCCTCC

ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTTTTCTATTGTCTGGCTGTATCTC
ACAGGTCCAGGGTGGACAAGGGCCCCCTTAGGAGCAGATTGGATGTGGGG
GTGAGGCAAGGTTGCCAGGGTGGGCTTAGGGATGAGCTTGAGAAGAAGAG
AACGAATGTCCTAATGAATCCCAGGCTCCTGGGGCAGGCTTCCCTTAGAC
CAGGGTAGCTGGGACCAACCGGGAACAGAAGACACTGTTCCCAGTGTCTT
CCCGGGGAACAAACACCAGCTCGATGCTCACACATCCCAAGTGCTGGGAG
AGAGCTAGCTACATGGTAGAGCTAGGAAAACTCATGTCCAAACCACACAC
TTTCTCCTCGGCATCTTACTACCCCCCGTTCAAGGGATGGCTTCCCTGTC
TGAGTGCAGGCAAATAGGGCATAGCTGTGAGAAGCAGAGTCAAGGGAGAG
GTGGGAAGAGGGCTTGCACAAGCTTGCCATAGAGATTCCGTACTTGGCTT
TCCTAACTACTACCAAACTCTGACGAGTTAATGGGGGCAGCTAAAGAGCC
GTGAAGATCAGCAAGGCCATCTGTCCTTTTGTGATTCATTTACAAACTTG
TCGCCTGACTCCTTATATAAGGGTGTATTCAGAACATGCTAGAGCCAAAA
AGTATATAACAACAGCAACAACAACAACAACAACCTGCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_o22.b1 MSMg01no309_o22.b1 CHROMAT_FILE:
MSMg01no309_o22.b1 PHD_FILE: MSMg01no309_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:38 2005
         (191 letters)



>mm_chr13_55160966_55161556
          Length = 591

 Score =  352 bits (182), Expect = e-102
 Identities = 185/186 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtgaaatgtttatgtattttcaaaacgttgggctgttctcaggtcaccttcatcatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 344 ttgtgaaatgtttatgtattttcaaaacgttgggctgttctcaggtcaccttcattatta 285

                                                                       
Query: 61  agcattgccctttactagtcagttttgatatgagttattatgagtttgggaactgaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 agcattgccctttactagtcagttttgatatgagttattatgagtttgggaactgaattt 225

                                                                       
Query: 121 ttgtgcagttctgtgattgggatagttttgttttgttttgttttgttttgttttgttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ttgtgcagttctgtgattgggatagttttgttttgttttgttttgttttgttttgttttg 165

                 
Query: 181 ttttgt 186
           ||||||
Sbjct: 164 ttttgt 159


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no309_o22.g1 MSMg01no309_o22.g1 CHROMAT_FILE:
MSMg01no309_o22.g1 PHD_FILE: MSMg01no309_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:38 2005
         (633 letters)



>mm_chr13_54989292_54990324
          Length = 1033

 Score = 1162 bits (601), Expect = 0.0
 Identities = 625/633 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttttctattgtctggctgtatctcacaggtccagggtggacaagggcccccttaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 201 tgttttctattgtctggctgtatctcacaggtccagggtggacaagggccaggttaggag 260

                                                                       
Query: 61  cagattggatgtgggggtgaggcaaggttgccagggtgggcttagggatgagcttgagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagattggatgtgggggtgaggcaaggttgccagggtgggcttagggatgagcttgagaa 320

                                                                       
Query: 121 gaagagaacgaatgtcctaatgaatcccaggctcctggggcaggcttcccttagaccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagagaacgaatgtcctaatgaatcccaggctcctggggcaggcttcccttagaccagg 380

                                                                       
Query: 181 gtagctgggaccaaccgggaacagaagacactgttcccagtgtcttcccggggaacaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagctgggaccaaccgggaacagaagacactgttcccagtgtcttcccggggaacaaac 440

                                                                       
Query: 241 accagctcgatgctcacacatcccaagtgctgggagagagctagctacatggtagagcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accagctcgatgctcacacatcccaagtgctgggagagagctagctacatggtagagcta 500

                                                                       
Query: 301 ggaaaactcatgtccaaaccacacactttctcctcggcatcttactaccccccgttcaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||| |  | |||||||
Sbjct: 501 ggaaaactcatgtccaaaccacacactttctcctcggcatcttactatcaactgttcaag 560

                                                                       
Query: 361 ggatggcttccctgtctgagtgcaggcaaatagggcatagctgtgagaagcagagtcaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggatggcttccctgtctgagtgcaggcaaatagggcatagctgtgagaagcagagtcaag 620

                                                                       
Query: 421 ggagaggtgggaagagggcttgcacaagcttgccatagagattccgtacttggctttcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggagaggtgggaagagggcttgcacaagcttgccatagagattccgtacttggctttcct 680

                                                                       
Query: 481 aactactaccaaactctgacgagttaatgggggcagctaaagagccgtgaagatcagcaa 540
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aactacaaccaaactctgacgagttaatgggggcagctaaagagccgtgaagatcagcaa 740

                                                                       
Query: 541 ggccatctgtccttttgtgattcatttacaaacttgtcgcctgactccttatataagggt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggccatctgtccttttgtgattcatttacaaacttgtcgcctgactccttatataagggt 800

                                            
Query: 601 gtattcagaacatgctagagccaaaaagtatat 633
           |||||||||||||||||||||||||||||||||
Sbjct: 801 gtattcagaacatgctagagccaaaaagtatat 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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