Query= MSMg01no312_m20.b1 MSMg01no312_m20.b1 CHROMAT_FILE:
MSMg01no312_m20.b1 PHD_FILE: MSMg01no312_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:58 2005
(557 letters)
>mm_chr13_28685901_28686857
Length = 957
Score = 1031 bits (533), Expect = 0.0
Identities = 548/553 (99%)
Strand = Plus / Plus
Query: 5 gaattcttcacaacagcccctgaagcatgaagcagaacatgctagaacagtggtacttga 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcacaacagtccctgaagcatgaagcagaacatgctagaacagtggtacttga 264
Query: 65 tattagctactcttctcactgtgaccaaatacctaacaaaacaactcaaggaaaggagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattagctactcttctcactgtgaccaaatacctaacaaaacaactcaaggaaaggagga 324
Query: 125 tttaattttagctcacagtctgtagacatatattccatcacaggagtggaaggcatgatg 184
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 tttaattttagctcacagtctgtagacatatattccatcacaggagtgggaggcatgatg 384
Query: 185 gctggagctccgtccctagtgctggaagcccatagcatggcttgttacatctctgtagat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctggagctccgtccctagtgctggaagcccatagcatggcttgttacatctctgtagat 444
Query: 245 catgaacatggacaggataggaagtagggtcaggctataaatctgaaattctataaacac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catgaacatggacaggataggaagtagggtcaggctataaatctgaaattctataaacac 504
Query: 305 tacctagcaacccatttcctctaccatgggacaggactcctaagggttccacaacatgcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacctagcaacccatttcctctaccatgggacaggactcctaagggttccacaacatgcc 564
Query: 365 aaaaacacccccacctactggtgagcaagtgttcgaacacaccagcccatgtggcacact 424
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaaaacaatgccacctactggtgagcaagtgttcgaacacaccagcccatgtggcacact 624
Query: 425 tcacactcaaatcataccttcctcttagttaaaccttcatcatttcaagattactctccc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcacactcaaatcataccttcctcttagttaaaccttcatcatttcaagattactctccc 684
Query: 485 gatttcttgctgtgactgttatagatactgaataagccaaggacttgctatctgtgtaga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gatttcttgctgtgactgttatagatactgaataagccaaggacttgctatctgtgtaga 744
Query: 545 tgaatgctgagtt 557
|||||||||||||
Sbjct: 745 tgaatgctgagtt 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no312_m20.g1 MSMg01no312_m20.g1 CHROMAT_FILE:
MSMg01no312_m20.g1 PHD_FILE: MSMg01no312_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:58 2005
(287 letters)
>mm_chr13_28749976_28750658
Length = 683
Score = 354 bits (183), Expect = e-102
Identities = 207/217 (95%), Gaps = 4/217 (1%)
Strand = Plus / Minus
Query: 1 tgagttttcagacttgtaagatcccctgaacttctagacggtgtggccagatgaaggggt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 320 tgagttttcagacttgtaagatcccctgaacttctagacggtgtggccagatgacggggt 261
Query: 61 gattcttcaagtgtctgtgtgatctatattctttctactcagtggtcggttaaatgtatg 120
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 260 cattcttcaagtgtctgtgtgatctata----ttctactcagtggtcggtaaaatgtatg 205
Query: 121 tgtgcacaaacacacacacacacacacacacacacacacacacacacacacacacacaca 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tgtgcacaaatacacacacacacacacacacacacacacacacacacacacacacacaca 145
Query: 181 cacagagagagagagagagagagagagagagagagag 217
| ||||||||||||||||||||||||||||||||||
Sbjct: 144 gagagagagagagagagagagagagagagagagagag 108
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 95
Number of extensions: 43
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 683
Length adjustment: 9
Effective length of query: 278
Effective length of database: 674
Effective search space: 187372
Effective search space used: 187372
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
