BAC Information

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BAC

Clone NameMSMg01-313B23
Chromosome13 (Build37)
Map Location 9,971,079 - 9,971,419
singlet/doubletsinglet
Overlap geneChrm3
Upstream geneGtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11, LOC100039604
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313B23.T7 (MSMg01no313_b23.b1)MSMg01-313B23.TJ (MSMg01no313_b23.g1)
ACCAG435141AG435142
length1,2021,187
length of high quality
(start - end)
361 (501 - 861)352 (465 - 816)
definitionCHROMAT_FILE: MSMg01no313_b23.b1 PHD_FILE: MSMg01no313_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:27 2005CHROMAT_FILE: MSMg01no313_b23.g1 PHD_FILE: MSMg01no313_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTTTNNNNAAATTCATTGGGCGCTATAGACTACTATAGGGAGAGGATCC
GCGGAATTCCAGTAAGTTTCATCTCTGTGAAAGCACACAGCACCTTCCTA
TTTTGCATATCAATACTTAAACTACATATTTATACATTGATTCAAAGTAG
TCTCTGATCTGAACTTGCCAATACAAAGGCCAATGCTCTTTTTGTTGCTG
CTGTAGTTGTTGCTGTTGTGGTTGTTATCGTTGTAGTTGTTGTTGTTGTC
ATTGGATAAAGCCATCTGGATACCATAGTAAGATTTCACTGACATACTGT
GAACTGGGAGTCAGCTAACACTGCAGTAAAGTTCTTGCCTGTTTTATCTC
CCAGGTAGTCTGTGATTACTATTACTTTAACACTTAAGATGTGTCTGTTC
TCTGGGTCTCAGGTAGCACACCAACATGCTGACCACCAGATACAAGATGC
TGTGAAATTTACCTCCTCGCCAGCCACTTTAAACCTGTCACTGCAACAAT
GAAAGCTGCTGGAGTGTCTTTAAGCCCTTCCCCTTCCCCTTCCCCTTCCC
CTTCCTCTTCCCCCCAACATTCTTGCTGCACCTGCGCTGCTTAGCGTTTC
CTGAGCTTCACATCCCCACCCCATCCCCATGCTTCTGTCATTTGCTTGGC
TCTAGCCTGAAAACTCTGTTCTTGGATTCAATCTGACACTTTCAAAGCCT
CACTTATCCCTGGGAGAGTTTGCCAGAAGAGAGTGAGGACAGTTCTGGAA
CAAAGGCCCTGCCTCGCACACACGCTGCTTCCAACCACTGCTGAAACTTC
TAAGTCACAGACAAGCCCAGCTTGGTGGCCCATGCTCTTTAGGGTATTTG
TGGCTCTCAGGACACCTGATGTCATAGGCTTCTCCCAGACAAGTTTCTAG
GCAGACAACACTTCCATAACAATTCACGAATACTTTAAGGAATCCTAAAA
CCCATTTCAAGGCAAATTTTAAAAAAAATAAAAAGAAATTTTTGAAGGAG
TATCCAAAAGGAAGGCGGGGTAAAATTTTTTTAGAAAGGAAAATTTCCCC
AAAAATAGGGCCTTTGCCCCCCTTTTGAACCATCACTTTTTTGTAGGCGG
TTTAAAAAAAAAATAAAAAACCCCCTTTCTGGAAAAGAGCCTCCTCCATA
AAAAAAAAAAAGAGCTTGTTCCCCTCCAACCGCGCAAAAACAAGATTTCT
TC
NNNTTCCCCAGACGTGATGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATAAAAGTAATGTACTCTGGTCACTCT
GTAGTGGACACTCAGCTGCCCTTTACTGGGTCAGCTCATTTGAGCCTCGG
TAACTGAGAACTTTCCCTTGCATTGCACTCTTGAAGAGATTGAATTGAAG
GGCAGGCATTGTTTTGTTTTTGTTTATTTAGGCAGGGTCTCATGTCACAT
ATCTTAGGTGGGTCTTACACTTACAAATGTGGCCAGGGATGACCTTCTGA
TCTTCCTGCCTGTCTCCAAAGTGGTTAACCTCTGTTCCACCAAACCCGGC
TTTGAAACTGATTGGAACGATCTAATATTACCTTAATTCAGAGGTGGTAA
ATGGCCTGACTTAGACTGGCTCTTTGATTCCAGGAAATCAGTAAATTTTC
CTCTCTCACTACTTTCACTAAAGGATACCGAAGATATAAAATACAACTTG
CCAAACGCATGAAATTCAAGAAGAACAAAGACCAAAGTGTGGACACTTTA
CCCTTTCTTAGAAATGGGAACAAAACACCCATAGAAGGAGTTACAGAGAC
AAAATTTGGAGCTGTGACGAAAGGATGGACCATCTAGTGATTGCCATATG
CAGGGATCCATCCCATAATCAGCTTCCAAATGCTGACACCATTGCATACA
CTAGCAAGATTTTGCTGAAAGGACCCAGATATAGCTCTCTCTTGTGAGAC
TATGCCAGGGCCTAGCAAACACAGAAGTGGATGATCACAGTCAGCTATTG
GATGGGTCACACGGCCCCCAATGGAGGAGCTAGAGAAATTACCCAAGGAG
CTAAAGGGAACTGCAACCCTATAGGTGGAACAACAATATGAACTAACCCG
TACCCGGGAGCTCTTGCCTTTAGCTGCATATGAATCAAAAGATGGCCCAG
TTGGCCCTCCCTGGCAAGAGAGGCCCCTTGGACTTGCAAACTTTAAAGGC
CCCCGAACAGGGGGACACCCCGGGCCAAAAAGGGGAAAGTGTGGTTAACG
CAATTTTTTCCTCCTCCCTCACTAGCTCCCCTTTTTCCTACCCCTCATTC
CTTCTACTCCCCACATGTTCTCTCCTACCCCACTCCCTCACTCCTTTCCT
CTCCTACCTTCCTCCCTACCCCTCTATCCCCTCCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_b23.b1 MSMg01no313_b23.b1 CHROMAT_FILE:
MSMg01no313_b23.b1 PHD_FILE: MSMg01no313_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:27 2005
         (361 letters)



>mm_chr13_9970833_9971591
          Length = 759

 Score =  598 bits (309), Expect = e-175
 Identities = 339/361 (93%), Gaps = 20/361 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaagctgctggagtgtctttaagcccttccccttccccttccccttccccttcctcttc 60
           ||||||||||||||||||||||||                  ||| ||||||||||||||
Sbjct: 587 gaaagctgctggagtgtctttaag------------------cccatccccttcctcttc 546

                                                                       
Query: 61  cccccaacattcttgctgcacctgcgctgcttagcgtttcctgagcttcacatccccacc 120
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 545 cccccaacattcttgctgcacctgcgctgctta--gtttcctgagcttcacatccccacc 488

                                                                       
Query: 121 ccatccccatgcttctgtcatttgcttggctctagcctgaaaactctgttcttggattca 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ccacccccatgcttctgtcatttgcttggctctagcctgaaaactctgttcttggattca 428

                                                                       
Query: 181 atctgacactttcaaagcctcacttatccctgggagagtttgccagaagagagtgaggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atctgacactttcaaagcctcacttatccctgggagagtttgccagaagagagtgaggac 368

                                                                       
Query: 241 agttctggaacaaaggccctgcctcgcacacacgctgcttccaaccactgctgaaacttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agttctggaacaaaggccctgcctcgcacacacgctgcttccaaccactgctgaaacttc 308

                                                                       
Query: 301 taagtcacagacaagcccagcttggtggcccatgctctttagggtatttgtggctctcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 taagtcacagacaagcccagcttggtggcccatgctctttagggtatttgtggctctcag 248

            
Query: 361 g 361
           |
Sbjct: 247 g 247


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 759
Length adjustment: 9
Effective length of query: 352
Effective length of database: 750
Effective search space:   264000
Effective search space used:   264000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)