Query= MSMg01no313_c05.b1 MSMg01no313_c05.b1 CHROMAT_FILE:
MSMg01no313_c05.b1 PHD_FILE: MSMg01no313_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:29 2005
(418 letters)
>mm_chr13_112143319_112144141
Length = 823
Score = 654 bits (338), Expect = 0.0
Identities = 383/410 (93%), Gaps = 21/410 (5%)
Strand = Plus / Minus
Query: 14 ggaattc-agttgcaggtgtactttctgtcgtgttgttgagagatgttgatggaatacaa 72
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ggaattcaagttgcaggtgtactttctgtcgtgttgttgagagatgttgatggaatacaa 399
Query: 73 gattcaatgtg----actgctagccccagttcagccagtggaaattaattgtgggtttat 128
||||||||||| ||||||||| ||||||||||||||||| |||||||||||| ||
Sbjct: 398 gattcaatgtgacaaactgctagctttagttcagccagtggaaagtaattgtgggttcat 339
Query: 129 gaacatcagagatcgctaaattatagtatgacatctcatagagattagatcctgattgat 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gaacatcagagatcgctaaattatagtatgacatctcatagagattagatcctgattgat 279
Query: 189 taagccctgtaaggacttgggggtaattgatatactacacacagaaatacatatgtgtgg 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 taagccctgtaaggacttgggggtaattgatatactacacacagaaatacatatgtgtgg 219
Query: 249 caaagatatatatatatatatatatatatatatatatatattcctcagtcccagaacttg 308
||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 218 caaag----------------atatatatatatatatatattcctcagtcccagaacttg 175
Query: 309 atcaaagccctcagggtgaacaactcagatactgaagaatctacttgttaagtgtggatg 368
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 174 atcaaagccctcagggtgaacaactgagatactgaagaatctacttgttaagtgtggatg 115
Query: 369 tgagcatttattgaggatcttgaagttaggctgtgtgtgtactaatatgt 418
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 tgagcatttattgaggatcttgaagttaggctgtgtgtgtactaatatgt 65
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 823
Length adjustment: 9
Effective length of query: 409
Effective length of database: 814
Effective search space: 332926
Effective search space used: 332926
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no313_c05.g1 MSMg01no313_c05.g1 CHROMAT_FILE:
MSMg01no313_c05.g1 PHD_FILE: MSMg01no313_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:29 2005
(390 letters)
>mm_chr13_112053940_112054729
Length = 790
Score = 526 bits (272), Expect = e-154
Identities = 364/416 (87%), Gaps = 37/416 (8%)
Strand = Plus / Plus
Query: 2 aagtttccttctggatgtgaggctttgggggttccttggcatggctgcgccc-cgccaac 60
||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||
Sbjct: 165 aagtttccttctggatgtgaggctttggggggtccttggcatggctgcgcccatgtcaac 224
Query: 61 aatgcgaattcactctgaactcactctgaactcactcagggagggcccttcagtcccaca 120
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 225 aatgcaaattcactctgaactcactctgaactcactcagggagagcccttcagtcccaca 284
Query: 121 aggacctgtccctgtccctg----t--ccctgtccctg---------------------- 152
|| ||||||||||||||||| | |||||||||||
Sbjct: 285 agaacctgtccctgtccctggccctggccctgtccctggccctggccctggccctggccc 344
Query: 153 ------t--ccctgtccctgtccctgtccctgcccctgtccctgtccctggctaagagac 204
| ||||| ||||| ||||| ||||| ||||| ||||| |||||||| ||||||
Sbjct: 345 tggccctggccctggccctggccctggccctggccctggccctggccctggctgagagac 404
Query: 205 acatgtttctagtgattccactggacatatggaacagaatttcagttagaagtgaacatt 264
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 405 acatgtttctagtgattccactggacacatggaacagaatttcagttagaagtgaacatt 464
Query: 265 tgcttgggaacttttaaagtctcaaccctacacattgctggagtctgttctctttgaaaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tgcttgggaacttttaaagtctcaaccctacacattgctggagtctgttctctttgaaaa 524
Query: 325 tactatgtgagaaatttttgacatttaagagttttatttccatatccagtaatatt 380
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tacaatgtgagaaatttttgacatttaagagttttatttccatatccagtaatatt 580
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space: 297561
Effective search space used: 297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
