Query= MSMg01no313_l04.b1 MSMg01no313_l04.b1 CHROMAT_FILE:
MSMg01no313_l04.b1 PHD_FILE: MSMg01no313_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:42 2005
(406 letters)
>mm_chr13_117468092_117468900
Length = 809
Score = 733 bits (379), Expect = 0.0
Identities = 398/405 (98%), Gaps = 3/405 (0%)
Strand = Plus / Minus
Query: 5 gaattctcaactgaggaaacttgaatggccaagaaaagcctaaagaaatgttcaacattc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gaattctcaactgaggaaacttgaatggccaagaaaagcctaaagaaatgttcaacattc 678
Query: 65 ttagtcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttagtcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcaga 618
Query: 125 atggctaatgtctttcttaaaagcttatattgttttcaaacacatca-ttttttttatgt 183
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 617 atggctaatgtctttcttaaaagcttatattgttttcaaacacatcatttttttttatgt 558
Query: 184 ttttatttttttgagaacttaatgcaatgtgttttggtcaaaattttccttttacccaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttttatttttttgagaacttaatgcaatgtgttttggtcaaaattttccttttacccaaa 498
Query: 244 ctcttttcagactgtt--cccccctccattaatcacatattgatatattgatacataatt 301
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 497 ctcttttcagactgttcccccccccccattaatcacatattgatatattgatacataatt 438
Query: 302 ttggtcacctgtaactaatatctcactgggttcttttaaaggcaataaagactatatagc 361
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct: 437 ttggtcacctgtaactaatatctcactgggttcttttaaaggcaataaagacaagagagc 378
Query: 362 actaaattgtttaatttccgtgagattgttctgagacagcacaga 406
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 actaaattgtttaatttccgtgagattgttctgagacagcacaga 333
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 809
Length adjustment: 9
Effective length of query: 397
Effective length of database: 800
Effective search space: 317600
Effective search space used: 317600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no313_l04.g1 MSMg01no313_l04.g1 CHROMAT_FILE:
MSMg01no313_l04.g1 PHD_FILE: MSMg01no313_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:42 2005
(378 letters)
>mm_chr13_117413607_117414384
Length = 778
Score = 685 bits (354), Expect = 0.0
Identities = 372/378 (98%)
Strand = Plus / Plus
Query: 1 tataaacctaaacattttgcctttggacataaacatattttgaaaaatttacccatttca 60
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
Sbjct: 201 tataaacctaaacattttgcctttggacataaacacattttgaaaaatttaagtatttta 260
Query: 61 catagaagacagacaaattgatttggatttgtgtgaggattatgtttgcagcaaagctaa 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 catagaagacagacaaattgatttggatttgtttgaggattatgtttgcagcaaagctaa 320
Query: 121 atagagcactgaaggatgaaggtaattcataaagagacactttgggatataaatactgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagagcactgaaggatgaaggtaattcataaagagacactttgggatataaatactgta 380
Query: 181 tccagttttaaaacacgtataatgcactggagtcatggttccatactaatcatattcact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccagttttaaaacacgtataatgcactggagtcatggttccatactaatcatattcact 440
Query: 241 tgcttctctgatttgtcccttcacctcccattcttctaatcacactcccatagaatgaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcttctctgatttgtcccttcacctcccattcttctaatcacactcccatagaatgaga 500
Query: 301 ggaacatactctaaccctttcactttacagacgagaaaatggagctaaaataaaatttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaacatactctaaccctttcactttacagacgagaaaatggagctaaaataaaatttaa 560
Query: 361 aatacaatagggcaatcc 378
||||||||||||||||||
Sbjct: 561 aatacaatagggcaatcc 578
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space: 283761
Effective search space used: 283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
