BAC Information

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BAC

Clone NameMSMg01-313O20
Chromosome13 (Build37)
Map Location 67,356,434 - 67,356,814
singlet/doubletsinglet
Overlap geneZfp458
Upstream geneEG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455
Downstream geneZfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313O20.T7 (MSMg01no313_o20.b1)MSMg01-313O20.TJ (MSMg01no313_o20.g1)
ACCAG435714AG435715
length1,2881,262
length of high quality
(start - end)
717 (89 - 805)381 (80 - 460)
definitionCHROMAT_FILE: MSMg01no313_o20.b1 PHD_FILE: MSMg01no313_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:12 2005CHROMAT_FILE: MSMg01no313_o20.g1 PHD_FILE: MSMg01no313_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGATTTTNNNNNNNCACATTGGGCGCTATAGACTACTATAGGGAGAGGA
TCCGCGGAATTCTTCCATAAATCTATCTCGATAAACTGTTTCCTTCCTTT
CTTCCTATCTTCCTTCCTCTTTCTATCTCTCTCCCCCTCTCTCTTTTCTT
TCTTTCTTTCTCTTTCTTTCTTTCTTCCTTCCTTTCTCTCTCTCTCTCTC
TCTTTCTCTCTCTCTTTCTTTTTTCTTTCTTCCTTTTTCTTTTTCAGGAA
AAGGAACTAGTTTTTGTGTGTATGTTCTCCTCATTTGTATGGTCTGATCA
GGTTGCTGGTCTCCTCTTGGTTTACATGGGTGGTCTGGAGGAATCTAGAA
ATGGAATAGGGGACAGGTTTCTAAAGTATTCCCTTATAAGGCTTTGTGTT
TCTCCAGTGTCTGCTGCAGTGTTCCCTGATTATCCTGGTCTGAATTGAGA
TCCCTCTTTTCTTTCCTTAAGTCAGTTAAGCCAACAAAAACTCTTCTTAA
TTGTCCTAAGAACCACCTCTGAGTCTCACTGATTGTTTTTGTAGATTTTG
TGGTTTCTATTTTGTCCTTTTATGCTCTCATTTTTATTTTTGTCTACTGA
ATTTTTGCTGCTGCTTCTTCTTCTCCTCCTTCTCCTCCTTCTTTGTAATT
CTTGAGTATTTGTGTTCCTTGTGTCTTTTTTTAAACATATACTTTTAAAG
CTATGAGTTTCCATCAGAGGACTTTAAGTTCATTAAGTTCCAGAAATTTT
TTGAAATCCATAAGATCCTTAGACAATTCATTCCTAAGTTCTAAAAGACT
AGAGATTCCAATTTAAACTACTATACTCAGCAAAAATTATCTGATGCAGT
TGAAAGAGAAAGACTTTTCAGGATACAAACAGGCTAAATCATGTTGATCA
AATCAAGTCAGAAAAAAAACCTGGCAGCAAGTGCTTTATACTTCGAAGAG
GAAAATACGCAAACCCAAAATGGTAGGAAAAAAAAAAAGGAAGGTACTGC
TCCTTCCAAAACCAAGGGGGTAAAAAAAAGGCCAAAAAGGGGGTGTTGTA
ATTATTATAACTCTGATGAAAAACTTTTATTATATAATCTAAGACACTTT
TGATTCTGTATCTTTTGCATTGTACTGAAAGATATATTATATCATAATAT
TTAATTGTAAATCCCTAGTTAACTTACTACTTATTGTATTGTTATATTCA
AACAATTTTGAATATTTAATATATTCGACATATCACATTATTATCATTCT
CTATTTTCAATCAGTTATTTATCGTTCATATATATATC
NAAATATANNNNNNAATGATGCGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATACAATAGAGAAACTCTAC
AAGTATGAAGCATGTACCTTGGCCTTCTATTGGCCATAATTACCTTCTCA
ACACAAGAGAACCCATTTCAGATGTGAGCCCCTACAATTGTAAAGTACAA
GTCCTGTCCTTTAGAACTTCCCAGATTCTTTCTACTCATTTCATAGCCCA
TTCTGGGGAGAAACATTACACATGTGAGTAATGGGGAAAAGCTTGCTCTA
CAAAGTCATACTTATGTCTTGCCAAATTAACTCACAATGTGGAGAACATA
TACAAATGCAAAGAATATGGGGAAATGCTCAACAAAAACTTTAGGGATCG
TCAAAGTATTTGTTCTGGAGGAAAAAAAAAACCCATATGAATGTAAAGAA
TCTGTCAATTATTTTATAAGCCCCATTGTATGACCAAACATGGGATGAAA
CAAACTGGAGACACACATTACAAATGTGAATAATATTGAAAAACCTATTA
CCAGTCTTATGATCTTAACCAACACTAAAGAATTCATCTGTCAAAGAAAC
CATTCAAATGTGAAGAATGTGCCAAGGTCTTCTGGACTTACTAAGTACTT
TTGAATCACCTCACAATTCATACTAGACTGAAATGCCACCTGTGAAAAAT
GTTGCAAACCCTTTAATAAGCGTTCTTATATTTCTCAACATAAAGTAGTT
CAACCTGGAGTGAAGTACAAATGTTAAAATGTTAAAAAAAAAACTTAACA
CTTCTTTAGACTCTAAAATTTATCGAAAGCTTCATGCTGAATAGAAGCCT
ATGAGTTGGGGCATGTGGTAAAGCCTTTGGAACAATCATGTCATACAAAG
CATTCATACAATTATGTCAAAAGTGGAGCTGTTAGACTCTGTGTTTGTCC
TTGAAGACTTGGAGCTGATAGCCCTTGCTGTCTCCCCTTTGGGGCCTGGG
AATCCTTTCCCCAACTCTTTCATAAAAGGTGCCCATCAAACACCCCTGTT
TGGCCCTGGTTGGGTCCGCACCCACCCAGAAAACTGTTGGGGAAAACCTC
CCCAAAAAAAAAATTGTTTAATTCCTGTCTGGCAGAAAAACAAACTATTA
TAAANGCCCGCCTTGTGGCTTCCCCACAAAAAAAGGGTTTAACAAAAACC
CCTCCCTCCCTTAAATTTGGAAAAAACCCCCCCCCCCAAAAAATATTTTC
TTGTTATAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_o20.g1 MSMg01no313_o20.g1 CHROMAT_FILE:
MSMg01no313_o20.g1 PHD_FILE: MSMg01no313_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:12 2005
         (381 letters)



>mm_chr13_67356234_67357014
          Length = 781

 Score =  723 bits (374), Expect = 0.0
 Identities = 380/382 (99%), Gaps = 2/382 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatacaatagagaaactctacaagtatgaagcatgta-ccttggccttctattggccata 59
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 581 aatacaatagagaaactctacaagtatgaagcatgtagcc-tggccttctattggccata 523

                                                                       
Query: 60  attaccttctcaacacaagagaacccatttcagatgtgagcccctacaattgtaaagtac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 attaccttctcaacacaagagaacccatttcagatgtgagcccctacaattgtaaagtac 463

                                                                       
Query: 120 aagtcctgtcctttagaacttcccagattctttctactcatttcatagcccattctgggg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aagtcctgtcctttagaacttcccagattctttctactcatttcatagcccattctgggg 403

                                                                       
Query: 180 agaaacattacacatgtgagtaatggggaaaagcttgctctacaaagtcatacttatgtc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agaaacattacacatgtgagtaatggggaaaagcttgctctacaaagtcatacttatgtc 343

                                                                       
Query: 240 ttgccaaattaactcacaatgtggagaacatatacaaatgcaaagaatatggggaaatgc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttgccaaattaactcacaatgtggagaacatatacaaatgcaaagaatatggggaaatgc 283

                                                                       
Query: 300 tcaacaaaaactttagggatcgtcaaagtatttgttctggaggaaaaaaaaaacccatat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tcaacaaaaactttagggatcgtcaaagtatttgttctggaggaaaaaaaaaacccatat 223

                                 
Query: 360 gaatgtaaagaatctgtcaatt 381
           ||||||||||||||||||||||
Sbjct: 222 gaatgtaaagaatctgtcaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)