BAC Information

Click to search

BAC

Clone NameMSMg01-315C18
Chromosome13 (Build37)
Map Location 41,232,918 - 41,233,206
singlet/doubletsinglet
Overlap geneLOC637277
Upstream geneOfcc1, LOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2
Downstream geneElovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231, 9530008L14Rik, LOC100039272, Hivep1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315C18.T7 (MSMg01no315_c18.b1)MSMg01-315C18.TJ (MSMg01no315_c18.g1)
ACCAG435888AG435889
length730744
length of high quality
(start - end)
289 (127 - 415)600 (77 - 676)
definitionCHROMAT_FILE: MSMg01no315_c18.b1 PHD_FILE: MSMg01no315_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:34 2005CHROMAT_FILE: MSMg01no315_c18.g1 PHD_FILE: MSMg01no315_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAATCCG
CGGAATTCTAGAGTTCTCATTTGTCCTTGGAGTATATGGCATAGATGATC
TACAAAGGAGAGGCACGTTTTAATCTCTCCACATGAATTCACCTAACGTT
GATAGGTTGTATGGTTTGTGTTGGGCAGATGTCAGGGAAGTGTATGGTAG
ATGAGTTAGTCAAATACTGGACTCTAAGGGAGGTCTACTTTTCTTGCTCA
CTCTTTGGCCCAAATGTACCCATCAAGCCCTGGCTTCTGAGCCCTGAGTA
TTCTCCAGCCGAGTAGGTAACTCTGAGGGTCGGAGGCGGGGGCTTGCCTA
CAACCTTCTCTCTGGCACAAAGCATTGCTGCCACAGAGCAGTGGAGCCTT
GTGAACCCTAGGGTTGGTCACCCCCCACCGAAGATAGTGTGCATCTAAAT
GTAAGACTCACACTGCTTATCCTAGGACTGTCGGCAGTTCCTCAATTTCC
TGAACAACAGGCTTGGCAACCAGAGAAGGTAATGTGACTTTGGGATTATT
TAGTTATGATATTTTGTAATATTTTAAGTGTATAGGTTCAACATTTTACT
GATAGGACCAAGTGGTTAATTGGTTGGCCATTGAGGAAGAGTCTGGTGTG
TTGGCTCACACCTGTAATCCTAGTACTTGTGAGGTAGATGGGGCTGGTTT
TTTTGTTTAGATCTGCTTTTCTTTTTCTGT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAAGAAACTTCAAAAGATAAG
ACATAAGAATGGGAAATAATTAACCTAAATAAAAACCACGCCAAGTGCAA
TGATGGGAGAGACAAACAGCTGCAAAACCTGGTGAGGAAAGGAAGAAAAT
ATCACCCTCATAAGCCCTGGGAAGAACGTGAACTGGCAGAAATGCACTGG
AAAATGGACTGCCAATCAAAACCAAAGCTTTGCCTGCTGCATTATCTATT
AATCCTCTTCTAACTTAACCAAGAGAAATTAAATGCATATATACAAAGAC
TTATGTAATAACTTATTACAGTTCTATACATAGCAAAAAAAAAAAAAAGC
AACAAGCAAAGGTCCATCTTTGCCAACGCACCAAGCTATTCCCATCCACC
AACACAGAGGAGCAGGCCTGTCTTGGGTTGGTTGTATTGACCATGACCCA
GGCTAGAGCCATCTGAGAAGAGAAAAATCACAGTTGAGAAAATCCTCCAT
AAGATTGAACTGAAGCCAATACTATGGGCCCTTTTCTTAGTGATTGATAC
AGGAAGACCTAGAGCATTGTAGGTAATACCACCCCTGGGCAGATGGTTCT
GGAGTGTATAAGAAAGCAGGCTGAGCAAGCTTATGATGAGAACGGCAGAC
AGCACTTCTCCATGGCTTCTGCTTCAGATCCCGCCTCCAGGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_c18.b1 MSMg01no315_c18.b1 CHROMAT_FILE:
MSMg01no315_c18.b1 PHD_FILE: MSMg01no315_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:34 2005
         (289 letters)



>mm_chr13_41232717_41233406
          Length = 690

 Score =  513 bits (265), Expect = e-150
 Identities = 283/289 (97%), Gaps = 1/289 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   tccacatgaattcacctaacgttgataggttgtatggtttgtgttgggcagatgtcaggg 61
           ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 202 tccacatgaattcacctaatgttgataggttgtatggcttgtgttgggcagatgtcaggg 261

                                                                       
Query: 62  aagtgtatggtagatgagttagtcaaatactggactctaagggaggtctacttttcttgc 121
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 262 aagtgtatggtagatgagttagtcaaatactggactctaagggaggtctatttttcttgc 321

                                                                       
Query: 122 tcactctttggcccaaatgtacccatcaagccctggcttctgagccctgagtattctcca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcactctttggcccaaatgtacccatcaagccctggcttctgagccctgagtattctcca 381

                                                                       
Query: 182 gccgagtaggtaactctgagggtcggaggcgggggcttgcctacaaccttctctctgg-c 240
           |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 382 gccgagcaggtaacactgagggtcggaggcgggggcttgcctacaaccttctctctgggc 441

                                                            
Query: 241 acaaagcattgctgccacagagcagtggagccttgtgaaccctagggtt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 acaaagcattgctgccacagagcagtggagccttgtgaaccctagggtt 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space:   190680
Effective search space used:   190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)