Query= MSMg01no315_f14.b1 MSMg01no315_f14.b1 CHROMAT_FILE:
MSMg01no315_f14.b1 PHD_FILE: MSMg01no315_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:47 2005
(689 letters)
>mm_chr13_99060165_99061253
Length = 1089
Score = 1292 bits (668), Expect = 0.0
Identities = 681/686 (99%), Gaps = 2/686 (0%)
Strand = Plus / Plus
Query: 4 ggaattcactttgcattccaggctggccttgaactctcagagattcgccttctccacctc 63
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 204 ggaattcactttgcattccaggctggccttgaactctcagagattcgtcttctccacctc 263
Query: 64 ccaagtgctgggattaaagacatgtgtcacttcagtccaaaagatgatatttttaatatc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccaagtgctgggattaaagacatgtgtcacttcagtccaaaagatgatatttttaatatc 323
Query: 124 cttgtaataatttaaatatttcaacacataaaattcagattactgtccagttggtctttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttgtaataatttaaatatttcaacacataaaattcagattactgtccagttggtctttg 383
Query: 184 aataaatccagcattaccatgcactgattggggatattctttcagtgagggataaaagaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aataaatccagcattaccatgcactgattggggatattctttcagtgagggataaaagaa 443
Query: 244 ggtgcattctgtacactgtaggcaaacaagggagaaactctcccttggtgacaggcttat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggtgcattctgtacactgtaggcaaacaagggagaaactctcccttggtgacaggcttat 503
Query: 304 gtgttaagctgtcccttgtctcttgtcccaggagggtccccatttctattttgcacggac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtgttaagctgtcccttgtctcttgtcccaggagggtccccatttctattttgcacggac 563
Query: 364 ttcttatgacacacaatagaaccatttcacttcctgaaaaattccctaaatctttttggt 423
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttcttatgacagacaacagaaccatttcacttcctgaaaaattccctaaatctttttggt 623
Query: 424 tttatttgtttgttttaaagatttatttattatgtacagtgttctgcctacatatatgct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttatttgtttgttttaaagatttatttattatgtacagtgttctgcctacatatatgct 683
Query: 484 tgcaagccagaagagggcaccagatctcattatagataattgtgagccaccatgtggctg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgcaagccagaagagggcaccagatctcattatagataattgtgagccaccatgtggctg 743
Query: 544 taaattgaactcagaacctcttgaagagcaatcagtgctcttaacctctgagccatctct 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 taaattgaactcagaacctcttgaagagcaatcagtgctcttaacctctgagccatctct 803
Query: 604 ccagcgcccccccccccaatcttcttgattaacacaaacttcttacatgcctatgcaaat 663
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ccagcgccccccccc--aatcttcttgattaacacaaacttcttacatgcctatgcaaat 861
Query: 664 gcattttaatgttttacttatgtgta 689
||||||||||||||||||||||||||
Sbjct: 862 gcattttaatgttttacttatgtgta 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_f14.g1 MSMg01no315_f14.g1 CHROMAT_FILE:
MSMg01no315_f14.g1 PHD_FILE: MSMg01no315_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:47 2005
(640 letters)
>mm_chr13_99088283_99089323
Length = 1041
Score = 1089 bits (563), Expect = 0.0
Identities = 621/647 (95%), Gaps = 13/647 (2%)
Strand = Plus / Minus
Query: 1 tgttgacagtgctaagtaagcagttcttgcattgttctatatgagcaccaaagggtggga 60
|||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 700 tgttgacaatgctaagtaagcagctcttgcattgttctatatgagcagtaaagggtggga 641
Query: 61 ggcaagcctttacacttgctgtagacagccggagcaagtgggaaatggtagtcctgaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ggcaagcctttacacttgctgtagacagccggagcaagtgggaaatggtagtcctgaaga 581
Query: 121 cagaccgcaaatggtaacttctagaggaaaagtaaaacaataacaaagtccttcgattgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 cagaccgcaaatggtaacttctagaggaaaagtaaaacaataacaaagtccttcgattgt 521
Query: 181 tttttaaaaggctggtatataaatattagcaaaatctgaagtcctggtgcagcaagggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tttttaaaaggctggtatataaatattagcaaaatctgaagtcctggtgcagcaagggtc 461
Query: 241 aaaataaacatcgtctt-tttacagtttggtgattttcaatatcatacaagtcttctata 299
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 460 aaaataaacatcgtcttccttacagtttggtgattttcaaaatcatacaagtcttctata 401
Query: 300 ccatgacagaataggggaaaagaaactaagtcatatttcttgaa------ccacccccta 353
|||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 400 ccatgacagaataggggaaaagaaactaagtcatatttcttgaatatagg------ccta 347
Query: 354 aaagatgagacaggtatcagttacatattgtagagttttatgtaaaaattcagaaaatat 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aaagatgagacaggtatcagttacatattgtagagttttatgtaaaaattcagaaaatat 287
Query: 414 catgattaggaagtttcacataccttcagtgtaatatgaagagtaaaatattctacagat 473
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 286 catgattaggaagtttcacatactttcagtgtaatatgaagagtaaaatattctacagat 227
Query: 474 aaacatttctttaaaaagaactagttagccgggcgtggtggcgcatgcctttaatcctag 533
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 226 aaacatttctttaaaaagaactagttagccgggcgtggtggtgcatgcctttaatcccag 167
Query: 534 cactcgggaggcagaggcaggcggatttctgagctcgaggccagcctggtctacagagtg 593
|||| |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct: 166 cacttgggaggcagaggcagggggatttctgagttcgaggccagcctggtctaaagagtg 107
Query: 594 agttccaggacagccagggctatacagagaaaccctgtctggaaaaa 640
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 agttccaggacagccagggctatacagagaaaccctgtctggaaaaa 60
Score = 192 bits (99), Expect = 9e-53
Identities = 123/131 (93%), Gaps = 2/131 (1%)
Strand = Plus / Minus
Query: 504 gggc-gtggtggcgcatgcctttaatcctagcactcgggaggcagaggcaggcggatttc 562
|||| ||||| || |||||||||||||| ||||||| ||||||||||||||| |||||||
Sbjct: 989 gggcagtggtagcacatgcctttaatcccagcactcaggaggcagaggcaggtggatttc 930
Query: 563 tgagctcgaggccagcctggtctacagagtgagttccaggacagccagggctatacagag 622
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 929 tgagttcgaggccagcctggtctacagagtgagttccaggacagcca-ggctatacagag 871
Query: 623 aaaccctgtct 633
|||||||||||
Sbjct: 870 aaaccctgtct 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 640
Length of database: 1041
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1031
Effective search space: 649530
Effective search space used: 649530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
