Query= MSMg01no316_b21.b1 MSMg01no316_b21.b1 CHROMAT_FILE:
MSMg01no316_b21.b1 PHD_FILE: MSMg01no316_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:47 2005
(610 letters)
>mm_chr13_84128945_84129954
Length = 1010
Score = 1077 bits (557), Expect = 0.0
Identities = 596/611 (97%), Gaps = 5/611 (0%)
Strand = Plus / Plus
Query: 1 tatctagaaccctggagtctggaatgtaaggctcagtggtaactggtatggtatagagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatctagaaccctggagtctggaatgtaaggctcagtggtaactggtatggtatagagac 260
Query: 61 caggatcaggcaggataatttctgttgcattgatttttaataaatgtacaaaccaaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggatcaggcaggataatttctgttgcattgatttttaataaatgtacaaaccaaagca 320
Query: 121 acagcaatagaaaagcaaatttaatacatctgtcgaccacagatttgtttaaaacaatga 180
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 321 acagcaatagaaaagcaaatttaatacatctttcggccacagatttgtttaaaacaatga 380
Query: 181 aattatggttaaaaagtataaatcttggaatcttaggattagtaggcaaacacttgtttt 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattatggttaaaaagtttaaatcttggaatcttaggattagtaggcaaacacttgtttt 440
Query: 241 gttttgttttgttttgtttttaatataaactaatttatcaactgattcaaatggatagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttttgttttgttttgtttttaatataaactaatttatcaactgattcaaatggatagac 500
Query: 301 ctgaaggtggaattcatttgttgggaaaaattattgtggcctttctgttaagatataaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgaaggtggaattcatttgttgggaaaaattattgtggcctttctgttaagatataaag 560
Query: 361 gcttttattcaatatgttgacgtcttaaaaatgaaaaacgaaaggatgaatgtggctcac 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttttattcaatatgttgacgtcttaaaaatgaaaaacgaaaggatgaatgtggctcat 620
Query: 421 tggtaaagtgcttcactaccacatgtagtgggtccattccccagcatctcaacctaaccg 480
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 621 tggtaaagtgcttcactaccacatgtagc----ccattctccagcatctcaacctaaccg 676
Query: 481 atcagacagacaaaataccgagattaagcatacttttagaaactgaagcaaccaggaaga 540
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 677 atcagacagacaaaatacagagattaagcatatttttagaaactgaagcaaccaggaaga 736
Query: 541 aa-cttgaatcgagtgtaataccatctcttggcagatggagataggaggattagaagtcc 599
|| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aatcttgaattgagtgtaatcccatctcttggcagatggagataggaggattagaagtcc 796
Query: 600 atccatttaaa 610
|||||||||||
Sbjct: 797 atccatttaaa 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_b21.g1 MSMg01no316_b21.g1 CHROMAT_FILE:
MSMg01no316_b21.g1 PHD_FILE: MSMg01no316_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:47 2005
(673 letters)
>mm_chr13_84290483_84291555
Length = 1073
Score = 1270 bits (657), Expect = 0.0
Identities = 669/673 (99%)
Strand = Plus / Minus
Query: 1 aaatgctttgcagataagtctttatcattaatgttaatgaaggacaggttaccttcattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 873 aaatgctttgcagataagtctttatcattaatgttaatgaaggacaggttatcttcattt 814
Query: 61 tagtgatggctttaatttctatcctgccaaacattttattgacacacatttctcccaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 tagtgatggctttaatttctatcctgccaaacattttattgacacacatttctcccaacc 754
Query: 121 ctactaaataatttaagcaccatgccctctttcttcatttgtatcactctttaaaatggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ctactaaataatttaagcaccatgccctctttcttcatttgtatcactctttaaaatggg 694
Query: 181 acttaatgaataaaaataacacagaattagacagcctatctagagagggcaaaaaagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 acttaatgaataaaaataacacagaattagacagcctatctagagagggcaaaaaagaaa 634
Query: 241 tagtggatggtcataacctgtataataagtggttgactaccctgtttaatctcataattc 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ttgtggatggtcataacctgtataataagtggttgactaccctgtttaatctcataattc 574
Query: 301 tcttgtggactagaataggaatatgcaatttgctaatgaagaaacaggcaaagagaatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tcttgtggactagaataggaatatgcaatttgctaatgaagaaacaggcaaagagaatat 514
Query: 361 attcattatgttaattccacatgatttattcaatgtcaccctgagttaaggctcagcata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 attcattatgttaattccacatgatttattcaatgtcaccctgagttaaggctcagcata 454
Query: 421 gaattgagtgattattgagataatccaaatagggtattggattactagagaaacacatgg 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 453 gaattgagtgattattgagataatccaaatagggtattggattactagaaaaacacatgg 394
Query: 481 atcttctcagaaaatttacaaataagattggtcctcatgtcagctttgtatagaaataat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atcttctcagaaaatttacaaataagattggtcctcatgtcagctttgtatagaaataat 334
Query: 541 tttgtcacaggatattattaactctggacaaaatacaatagtgtttcaattcaaattcaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tttgtcacaggatattattaactctggacaaaatacaatagtgtttcaattcaaattcaa 274
Query: 601 aggcatgttgcttttgcttattagatatagaccatccactgtgaaggaggggtgcatatg 660
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 273 aggcatgttgcttttgcttattagatatagaccatccactgtgaagaaggggtgcatatg 214
Query: 661 gacagcaatatac 673
|||||||||||||
Sbjct: 213 gacagcaatatac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
