Query= MSMg01no316_h04.b1 MSMg01no316_h04.b1 CHROMAT_FILE:
MSMg01no316_h04.b1 PHD_FILE: MSMg01no316_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:12 2005
(684 letters)
>mm_chr13_5427148_5428231
Length = 1084
Score = 1210 bits (626), Expect = 0.0
Identities = 669/686 (97%), Gaps = 8/686 (1%)
Strand = Plus / Plus
Query: 6 gaattctccattataatgcattatagccagtgactatgaaccagagtgaattctttctt- 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaattctccattataatgcattatagccagtgactatgaaccagagtgaattctttcttt 259
Query: 65 ---gaatttttcttggggtattatatcacagcaataagaacagtaacaaagaaagctgtg 121
|| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 260 cttgattttttcttggggtattgtatcacagcaacaagaacagtaacaaagaaagctgtg 319
Query: 122 tatcacactacaataacttgagaaggtaagtatacatgttgcttctataggctagtggct 181
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 320 tatcacactacaataacttgagaaggtaagtataaatgttgcttctataggctagtggct 379
Query: 182 tctttatgccacatgtttctccatgaaacaa-aaggcttgctgcttataggacaagtctc 240
| |||||||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||
Sbjct: 380 tttttatgccacttgtttctccatgaaccaacaag-cttgctgcttataggacaagtctc 438
Query: 241 aactacctagttgctaatgctttccagtctgtgtcgcttgctttggaatttctta--gtg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 439 aactacctagttgctaatgctttccagtctgtgtcgcttgctttggaatttcttaaagtg 498
Query: 299 tgtgtttttaactcttgtaaatatgacaaagaggaaatgctgcaatggcaaatggctatt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgtgtttttaactcttgtaaatatgacaaagaggaaatgctgcaatggcaaatggctatt 558
Query: 359 tctctatttcacacacgtgccatggtgagcctagtttgatagaactcattccaacaaatg 418
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tctgtatttcacacacgtgccatggtgagcctagtttgatagaactcattccaacaaatg 618
Query: 419 aattttcaatgtttaatctagaaactgcagccattgtaaagcctgtcaacactgcaaaaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aattttcaatgtttaatctagaaactgcagccattgtaaagcctgtcaacactgcaaaaa 678
Query: 479 ttaagaagagtacatggctagacatatagtatacaagtgtatagtgatgagcaatggcca 538
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 679 ttaagaagagtacatggctagacatatagtatgcaagtgtatagtgatgagcaatggcca 738
Query: 539 agcagatagtatataatattttaaaattaatctcagacacttaattctgatagtatttcg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 agcagatagtatataatattttaaaattaatctcagacacttaattctgatagtatttcg 798
Query: 599 gccatgtttctacaattgaataatttttataaaggatgaaaatattttcactatttgtgt 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gccatgtttctacaattgaataatttttataaaggatgaaaatattttcactatttgtgt 858
Query: 659 ttatactattttccatgctaataaca 684
||||||||||||||||||||||||||
Sbjct: 859 ttatactattttccatgctaataaca 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_h04.g1 MSMg01no316_h04.g1 CHROMAT_FILE:
MSMg01no316_h04.g1 PHD_FILE: MSMg01no316_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:12 2005
(627 letters)
>mm_chr13_5478905_5479932
Length = 1028
Score = 1178 bits (609), Expect = 0.0
Identities = 623/628 (99%), Gaps = 1/628 (0%)
Strand = Plus / Minus
Query: 1 attctaatatggccaatggtagagaagtagaaagtgtctaatctatcttatctgccttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 828 attctaatatggccaatggtagagaagtagaaagtgtctaatctatcttatgtgccttcc 769
Query: 61 aatgaagtgtcctcttcccactcaaccagacacagcctctgatatttcccttcaaccatt 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 768 aatgaagtgtcctcttcccactcaaccagacacagcctctggtatttcccttcaaccatt 709
Query: 121 ggtacactacaaaaggaagattaattgttttgctctaactcaggatgagtctatttcatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ggtacactacaaaaggaagattaattgttttgctctaactcaggatgagtctatttcatt 649
Query: 181 gaaattgcccttgtttattttcccccagttaagagcttttcaataaacatttacttatcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gaaattgcccttgtttattttcccccagttaagagcttttcaataaacatttacttatcg 589
Query: 241 ttgaaagttaataatgtaaaaaaaaagttctttttaatttgattgagatttattattatt 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ttgaaagttaagaatgtaaaaaaaaagttctttttaatttgattgagatttattattatt 529
Query: 301 gttatataagtacatagtttgtcctgtcttataatcctcagcatctctcatgcagatgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gttatataagtacatagtttgtcctgtcttataatcctcagcatctctcatgcagatgct 469
Query: 361 accacatctgtatcaatttagaataaaatagtttcaccatctgactcaagtacttcttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 accacatctgtatcaatttagaataaaatagtttcaccatctgactcaagtacttcttaa 409
Query: 421 taattttggttttgctttcattgaattttatttacctacaaaatttatgatttatgaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 taattttggttttgctttcattgaattttatttacctacaaaatttatgatttatgaaat 349
Query: 481 acccatgtttcactttgtgttttctgccttanaacttgatggttttgacatcagatttac 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 348 acccatgtttcactttgtgttttctgccttaaaacttgatggttttgacatcagatttac 289
Query: 541 aaatgtatttcatgacctcccttctggcctgtgccttctgcctgggcaaatcatcagcat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aaatgtatttcatgacctcccttctggcctgtgccttctgcctgggcaaatcatcagcat 229
Query: 601 gttgcccctttgaaga-ccacagtttga 627
|||||||||||||||| |||||||||||
Sbjct: 228 gttgcccctttgaagacccacagtttga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1028
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1018
Effective search space: 628106
Effective search space used: 628106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
