Query= MSMg01no316_n18.b1 MSMg01no316_n18.b1 CHROMAT_FILE:
MSMg01no316_n18.b1 PHD_FILE: MSMg01no316_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:43 2005
(683 letters)
>mm_chr13_55330642_55331724
Length = 1083
Score = 1272 bits (658), Expect = 0.0
Identities = 673/678 (99%)
Strand = Plus / Plus
Query: 5 gaattcaaagttatcatatgctgctgagatctcagccagccaccagtagagtgagtacaa 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaagttagcatatgctgctgagatctcagccagccaccagtagagtgagtacaa 264
Query: 65 agaaaacattcttgttgtgaagcgtgtcctctcattgccttctttctgcagaggcaaaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaaaacattcttgttgtgaagcgtgtcctctcattgccttctttctgcagaggcaaaga 324
Query: 125 tgtacaacagccctaaaacatctctagaggcctgggtgaggtcagtcagtaagacttgaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtacaacagccctaaaacatctctagaggcctgggtgaggtcagtcagtaagacttgaa 384
Query: 185 gtagtcaaattgactacttaagaattttatttttgacttgaagaagttaaatattggtta 244
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtggtcaaattgactacttaagaattttatttttgacttgaagaagttaaatattggtta 444
Query: 245 tttgggtcatgaggtttttgtgaatttcaagagtttcatcactttattatcctaggctaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttgggtcatgaggtttttgtgaatttcaagagtttcatcactttattatcctaggctaa 504
Query: 305 agattatctagcattgccagtcctcagaatacattcctgatatttggtgctggggataaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agattatctagcattgccagtcctcagaatacattcctgatatttggtgctggggataaa 564
Query: 365 acccacccccctgtatgaattaggcatatgctcattattgagctacatacctggcctgtc 424
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acccagggccctgtatgaattaggcatatgctcattattgagctacatacctggcctgtc 624
Query: 425 tctcccctgcaagtcttaatttgtagtcccgatagcttcaaactccttgtgtagtctagt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctcccctgcaagtcttaatttgtagtcccgatagcttcaaactccttgtgtagtctagt 684
Query: 485 ttggtctccaacttgtgttcttgcctatgccttctatgtgttgggattacaaatatgaac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttggtctccaacttgtgttcttgcctatgccttctatgtgttgggattacaaatatgaac 744
Query: 545 cactggcttttagaccatgctttctttcattttttattacatttatttgagtgtggcaag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cactggcttttagaccatgctttctttcattttttattacatttatttgagtgtggcaag 804
Query: 605 taagggaacacctgtgccatggcacacatggaggtaagaggatcatgtgatcaaactcag 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 taagggaacacctgtgccatggcacacatggaggtaagaggatcatgtgatcaaactcag 864
Query: 665 gtcatcccacttgttggc 682
||||||||||||||||||
Sbjct: 865 gtcatcccacttgttggc 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_n18.g1 MSMg01no316_n18.g1 CHROMAT_FILE:
MSMg01no316_n18.g1 PHD_FILE: MSMg01no316_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:44 2005
(599 letters)
>mm_chr13_55498972_55499970
Length = 999
Score = 1042 bits (539), Expect = 0.0
Identities = 584/599 (97%), Gaps = 2/599 (0%)
Strand = Plus / Minus
Query: 1 ctttaactcagggggagcaaagcaggctgggctgaggttgggatgcctgaggaagaagaa 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 798 ctttaactcagggggagcaaagcaggctgggctgaggttgggatgtctgaggaagcagaa 739
Query: 61 gaggaaaccacaacaagagcaggggtgatgggccagggatagggttgagagaccaggctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gaggaaaccacaacaagagcaggggtgatgggccagggatagggttgagagaccaggctc 679
Query: 121 tggggtcaccttgaggttctctgccaacagagcttcaagactccccagctgtcctctgat 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 678 tggggtcaccttgaggttctctgccaacagagcttcaagactcctcagctgtcctctgat 619
Query: 181 gactcagggtccctggaactgcagatccactcagtgtcttcagggtaacatttatctaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gactcagggtccctggaactgcagatccactcagtgtcttcagggtaacatttatctaac 559
Query: 241 tgttctctaccacagaagacaggcccctctgcacattcctgcttctagttaagcaaggtt 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 558 tgttctctaccacagaagacaggcccctctgcacattcctgcttcaagttaagcaaggtt 499
Query: 301 aactgatcagtcctttacggtctgggcatagtgactctcccaccgctctctgtgcagtgg 360
||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 498 aactgatcagtccttcacggtctgggcatagtgactctccgagggctctctgtgcagtgg 439
Query: 361 cgaggagtgcagaacagacccagcttggtcagattccagctcct-cctaaagcaataatt 419
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 438 cgaggagtgcagaacagacccagcttggtcagattccagct-ctacctaaagcaataatt 380
Query: 420 taggccaaagaatgctcaaaaggaaggggaaaggatggggagtacagccggaattggctt 479
||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct: 379 taggccaaagaatgctcaaaaggaaggggaaaggatgggaagtaaaaccggaattggctt 320
Query: 480 tttgatgctgaagatggaacctgaggcactgcacagtgctacgaaagcgatttgaccctg 539
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttgatgctgaagatggaacccaaggcactgcacagtgctacgaaagcgatttgaccctg 260
Query: 540 tgctgcaccctcacattttaggaagagtgaccataaatttgcttgaccaaatctccccc 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgctgcaccctcacattttaggaagagtgaccataaatttgcttgaccaaatctccccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
