BAC Information

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BAC

Clone NameMSMg01-317L15
Chromosome13 (Build37)
Map Location 33,463,741 - 33,464,079
singlet/doubletsinglet
Overlap genenone
Upstream geneWrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f
Downstream geneOTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317L15.T7 (MSMg01no317_l15.b1)MSMg01-317L15.TJ (MSMg01no317_l15.g1)
ACCAG437716AG437717
length738743
length of high quality
(start - end)
338 (75 - 412)602 (77 - 678)
definitionCHROMAT_FILE: MSMg01no317_l15.b1 PHD_FILE: MSMg01no317_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:46 2005CHROMAT_FILE: MSMg01no317_l15.g1 PHD_FILE: MSMg01no317_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:46 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGGCAGATCCCACAGACAAATAAATTTTATGCCTGAGCCTAGCC
TTTTCTTTTTTATATTAACAACCGGAAGGAGATATAACCTCCCCTCCCCA
GCCTGAAACCTATTTGCTCAGGTTTCAGTGTTAGAGAACATGGGGGGGGG
GCAGAGCTTGCTGCGCTATTGTCCTGCCACTCCCACTGCCTGCCTCTTAG
CTGTTCCGGAGCCGTCATGTGTTCACCTGCAACCTTACCCCGAGATGATT
TGGTGAGAATCCTCCTGGGAATTCTCAACTCAAAGATATGGCTTCTGGTT
TCTATCTGCACACCTGAACTAACCTTGTGCCAAGGGTCTCTGCAACACAA
TTCTGCCCAGAGTATACACTCATGCCCAAAGAGTGCTGACAAACCTAATC
TCAGGGTCACAGGCTCACAGGACTTAAAAACTCCAGTCAGAGACAGCAAG
ATCACCTAACACCAGAGACAACCAGATTGTAAGAGGAAAGCCTAATAACG
TAAACAACATAATCCAAGGCTACGTGGCATCATTAGAACCCAATTCTCCC
ACCACAGGAAACCCTGGATACTCAAACACACCTGAGAAACAAGATTCTGA
TTTTAAAATCACATCTGATGATTATGATAGTGGACTTTAAGAAGTACATA
ATTCCCATAAAGAGATGCTGGAGAACACAAGAAAACCG
NCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAACTCTGTGCCCCAATT
TTTAATGGGGCTATATGTATTTCTGGAGTTCAGCTTCTTGAATTGTTTGT
ATATATTGGACATTACTTCCCTATCAGGTTTATGATTGGTAAAAATTCTT
TCCCAATTTTTGGTGGCCTATTTGTCTTATTGAGAGAATCTTTTGCCCTA
CAGAAGCTTTGCAATTTTATGAGATCCCATTTGCCTATACTTTATCTTAC
AGCACAGACCATTGCTGATCTCTTTATGAATTTTTCCCTGTGCTCATATC
TTCAAGGCTTTTCCCTGCTTTCTCTTATATAAATTTCAGTGACTATGGTT
TTTTTGTAGAGTTCATTGACCCACTTAGACATGAGATTTGTACAAGGAGA
TAAGAATGGGTCATTTTTCATTCTTCTACATGATAACCACCAGTTGTGCC
AGCACCATTTGTTGAAAATGCTGTCTTTTTGTCACTGGATGGTTTTAGCT
CCCTTGTAAAAGATCAAGTAACCATAGGTGTGTGGGTTCATTTCTGAGTC
TTCAGTTCTATTTCATTGATCTACCTGTCTGACGCTGTACCAGTACCATG
CAATTTTTACCACAATTGCTCTGTAGAACAGCTTGAGGTCAGGCATGGTC
ATTCCACCAGAGGTTCTTTTATTGCTTAGAATAGTTTTTGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_l15.b1 MSMg01no317_l15.b1 CHROMAT_FILE:
MSMg01no317_l15.b1 PHD_FILE: MSMg01no317_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:46 2005
         (338 letters)



>mm_chr13_33463541_33464279
          Length = 739

 Score =  601 bits (311), Expect = e-176
 Identities = 332/339 (97%), Gaps = 1/339 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaattttatgcctgagcctagccttttcttttttatattaacaaccggaaggagata 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aataaattttatgcctgagcctagccttttcttttttatattaacaacaggaaggagata 260

                                                                       
Query: 61  taacctcccctccccagcctgaaacctatttgctcaggtttcagtgttagagaacatggg 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 taacctcccctccccagcctgaaacctgtttgctcaggtttcagtgttagagaacatggg 320

                                                                       
Query: 121 ggggggg-cagagcttgctgcgctattgtcctgccactcccactgcctgcctcttagctg 179
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggggggcagagcttgctgcgctattgtcctgccactcccactgcctgcctcttagctg 380

                                                                       
Query: 180 ttccggagccgtcatgtgttcacctgcaaccttaccccgagatgatttggtgagaatcct 239
           |||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 381 ttccggagccatcatgtgttcacctgcaaccttactccaagatgatttggtgagaatcct 440

                                                                       
Query: 240 cctgggaattctcaactcaaagatatggcttctggtttctatctgcacacctgaactaac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgggaattctcaactcaaagatatggcttctggtttctatctgcacacctgaactaac 500

                                                  
Query: 300 cttgtgccaagggtctctgcaacacaattctgcccagag 338
           |||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 cttgtgccaaggctctctgcaacacaattctgcccagag 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 739
Length adjustment: 9
Effective length of query: 329
Effective length of database: 730
Effective search space:   240170
Effective search space used:   240170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)