BAC Information

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BAC

Clone NameMSMg01-318C04
Chromosome13 (Build37)
Map Location 86,686,872 - 86,879,733
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC435373, LOC675662, Cox7c, LOC100042887, LOC100042893
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318C04.T7 (MSMg01no318_c04.b1)MSMg01-318C04.TJ (MSMg01no318_c04.g1)
ACCAG438015AG438016
length721710
length of high quality
(start - end)
373 (46 - 418)350 (70 - 419)
definitionCHROMAT_FILE: MSMg01no318_c04.b1 PHD_FILE: MSMg01no318_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:15 2005CHROMAT_FILE: MSMg01no318_c04.g1 PHD_FILE: MSMg01no318_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,686,872 - 86,687,241)(86,879,389 - 86,879,733)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGAGAATCCGCGGAA
TTCTAAGGAAGTTTACAAATTATATATCATGTAAACACATTTGAATAAAA
ATATAGCTTTTGTGAGTAATAAAAATTCAAAATAAATTCATGTAGTTATC
TTCATATACATACTATCTTAATTATGCTTATGCAAATATTTTAATTAGAT
TAGAAATTAACTATAATAATCAATGCAACAAAGTAAAGACTTATTTTTAT
AAATTAAAATAGATACTTTCAATTTTATAGAAACTGAATATACAAACAGT
TTTAATAGAAGGGAATGTGGGAAATGGTATAAAATGTACTGGCCCAGGGG
AATGTTTTCTGAGTAGAACACCAATGGCTCACTCTCTAACATCAATAATT
GGTAAATGGGACCTCAGCACCCCCACACGCTTCTGTAAGGCAAAGGATAC
CCTAATTGGGACAAAACAGCAAGAAACAGATTGGAAAAAAAGTCTTCACT
AACCCTATATCTGATACAGGGCTAATATCCAAAATGTATAATGAACTCAA
GGAGATAGACACCAACAATCCAAATAACCCAATTAAAAAAAAGGGGGGAG
GGGATGTGTGCAGAGCCAAACAGAGAAATTCTCAACAAAGGAGTCACAAT
TGACCCAGAAGCACTTAAAGACATGTTCACCATCTTTAGTCATCATAGAA
ATGCAACTCAAAAGTGACTTN
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAATGTGTGATTTGAGCTCTAGTAAAGTTTCT
TCTACTCATGCAGTTGCCCTTGCTTTGGGGGCATAAATGTTCAGAACTGA
AATGTCATCTTGATGATTATTTTTCTTTGATGAGTATGAAGTGTCCTTCC
CCATCTCTTTTTGTAATTTTTGATTAAAAGTTGCCAGTGTCCAGCCTCAA
CACAGGTTTGGAGTTCTCAACTGGAAGCACAAATATCTGAAAGGAACATA
ATAAATAAACACACACTAATTTTGGGGTACAAAATGACAGGCATTTTTTC
AAGGCTTATAGTTTCTTTCTTCTCCCCTGCTCTGCATTCTTTCTCTTTCA
CTCCTTTGCTCGCACCCCGACGCTACACACACACTGCATTCTCTAGCGCA
CTTTGTTTTTCTCTTGTGCACTTTTCTTGAACTCTCAAACTCCTACACAC
ACATCTCACACATAACACATGCACTCTCCTTTCACTCATGAGTACACTTT
CCATACACACCTGTAGGGAATTTTGCTATGCAGACAGGCTTGTCTCCAGC
CGAGCTCAGGTCTGAACCCCGATGGCCATAATTCTACTTTATTGACCGGT
AAGCATTCCCTTATGCTTTTAGAACTCTGGCTCTTGTCCAATTTATCGCC
CCTACCATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_c04.b1 MSMg01no318_c04.b1 CHROMAT_FILE:
MSMg01no318_c04.b1 PHD_FILE: MSMg01no318_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:15 2005
         (373 letters)



>mm_chr13_86686670_86687442
          Length = 773

 Score =  669 bits (346), Expect = 0.0
 Identities = 364/370 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctaaggaagtttacaaattatatatcatgtaaacacatttgaataaaaatatagc 62
           ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctaaggaagcatataaattatatatcatgtaaacacatttgaataaaaatatagc 262

                                                                       
Query: 63  ttttgtgagtaataaaaattcaaaataaattcatgtagttatcttcatatacatactatc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttttgtgagtaataaaaattcaaaataaattcatgtagttatcttcatatacatactatc 322

                                                                       
Query: 123 ttaattatgcttatgcaaatattttaattagattagaaattaactataataatcaatgca 182
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttaattatgcttatgcatatattttaattagattagaaattaactataataatcaatgca 382

                                                                       
Query: 183 acaaagtaaagacttatttttataaattaaaatagatactttcaattttatagaaactga 242
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 383 acaaagtaaagacttatttttataaatgaaaatagatactttcaattttatagaaactga 442

                                                                       
Query: 243 atatacaaacagttttaatagaagggaatgtgggaaatggtataaaatgtactggcccag 302
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 443 atatacaaacagttttaatagaagggaatgtgggaaagggtataaaatgtactggcccag 502

                                                                       
Query: 303 gggaatgttttctgagtagaacaccaatggctcactctctaacatcaataattggtaaat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gggaatgttttctgagtagaacaccaatggctcactctctaacatcaataattggtaaat 562

                     
Query: 363 gggacctcag 372
           ||||||||||
Sbjct: 563 gggacctcag 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no318_c04.g1 MSMg01no318_c04.g1 CHROMAT_FILE:
MSMg01no318_c04.g1 PHD_FILE: MSMg01no318_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:15 2005
         (350 letters)



>mm_chr13_86879025_86879774
          Length = 750

 Score =  652 bits (337), Expect = 0.0
 Identities = 343/345 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtgtgatttgagctctagtaaagtttcttctactcatgcagttgcccttgctttggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aatgtgtgatttgagctctagtaaagtttcttctactcatgcagttgcccttgctttggg 650

                                                                       
Query: 61  ggcataaatgttcagaactgaaatgtcatcttgatgattatttttctttgatgagtatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ggcataaatgttcagaactgaaatgtcatcttgatgattatttttctttgatgagtatga 590

                                                                       
Query: 121 agtgtccttccccatctctttttgtaatttttgattaaaagttgccagtgtccagcctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 agtgtccttccccatctctttttgtaatttttgattaaaagttgccagtgtccagcctca 530

                                                                       
Query: 181 acacaggtttggagttctcaactggaagcacaaatatctgaaaggaacataataaataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 acacaggtttggagttctcaactggaagcacaaatatctgaaaggaacataataaataaa 470

                                                                       
Query: 241 cacacactaattttggggtacaaaatgacaggcattttttcaaggcttatagtttctttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 469 cacacactaattttggggtacaaaatgacaggcattttttcaaggcttaaagtttctttc 410

                                                        
Query: 301 ttctcccctgctctgcattctttctctttcactcctttgctcgca 345
           ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ttctctcctgctctgcattctttctctttcactcctttgctcgca 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)