BAC Information

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BAC

Clone NameMSMg01-319M18
Chromosome13 (Build37)
Map Location 80,102,673 - 80,102,846
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666925
Downstream geneLOC382780, EG666933, Arrdc3, LOC666964, LOC100043074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319M18.T7 (MSMg01no319_m18.b1)MSMg01-319M18.TJ (MSMg01no319_m18.g1)
ACCAG439214AG439215
length724762
length of high quality
(start - end)
174 (124 - 297)154 (129 - 282)
definitionCHROMAT_FILE: MSMg01no319_m18.b1 PHD_FILE: MSMg01no319_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:11 2005CHROMAT_FILE: MSMg01no319_m18.g1 PHD_FILE: MSMg01no319_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTATACGATCATATTTTCAAAAAACGCGGAANCNGACAGTTT
CAAAAGAGACGAAACTTTATTTGAGATGTTATTAATTTAGAAATATTTTT
TGACATCTACCGAAGTAATGGGNAGAAAGAAACCATCTCCTCATGGTTTT
GAAATATAACTGCTTGGTCTCTAAAAAGTGATGCAACACACAGAAACAAA
CAAACACAGATTTAACTTATGTCCAAAAACATATTCTGATATATTTGATT
CAAATTTATTTTTTATATATTACCACTCCATTATACATCATTTGGAAATA
ATATGTGTTAGTGTTACCTATTCAGATAAGACTTTTCTCTTTTTTTTTCC
TCGCCCCTCCCCTCCTGTTTTTAATGTTTCTTTGTATGATAAGCCAAAAA
GTTAAATCATGAAACTAAACCAATACTTAAGTTATTCTGAATATTTAAAT
TAATGTATATTTAGAGTAAGTATAGTTATACTGTTATGAAGTTGATGGTA
GGCACTAATAATAATATAAAAGCCGAATTAAAAGCCACTGACAATCATTG
AAATACAAACAATTGATACGTTTAAAAGTGGATTCTCTGAATTGTGGCTG
CTAAACACCCCAATGGGAAATGTTTGAACTCATCATTAATTTTCACCTTT
TGCCAGATACTGAAAAAACGCATTTCTCTAACTATTTCCGAATTTGCTTA
CCCTATTCTATTGAAAAAAACAAA
ATGGGAGGCCTGGAGGACGACTGGCCTACCTCACCAGAGNGNANNATAGA
AGGATCCCATCACTCGGGAATGTTTTTAATTTTTTTATTATTTATTCTGT
GCCCAAGTTTTTCTCCCATATAAAGGGGTTCAGTTTCCATGGTTATGTGG
GTTTTCTGTTGTTTTTGTTATTATTGAGGACCAGCTTTATGATATGATAG
GATACATGAGAGTATTTCATTCTTCTTGTATTGATTGAGGCTTGTCTTGT
GACTAGTTATATGGGCAACTTTGACTAAGGTACCTTGAGGTGCTGAGAAG
TTGTATTCTTTTTTTTTATTGAGAAATATTCTGTAGACAACTGTTAAATT
AAACTCTGTTTAGTTCCTGTTTCAACGACCTGACCATTAGTAAAAGTGGG
GCGTTGAAGTCTCCCACTATCATTGTGCGTGGCTCAATGTGTGTTTTGAG
CTTCACTATAGCTTCTTTCACTTATCTGTTCACCCTTGCATTTGTTGCCT
ATATGCTCATAGTTGACAATCTCCCGAGGCAAATCTTTTCTTTGATGAAT
AAGAACCTCCTTTGTTCACATCACCTTAATACCTTCTGTTCGCACGCATA
CTCTCCTTTGTATATTTAATTTAACCCTTCCTGCCCTCTCTTTATAAATC
CCATTTTCTCCCGGCTATTCTATTTTCTTAATCCTTTTTATTAATAATTT
TATAGTTCCGCGGTCCTGGTTAATTGCGCAGCTGGTATTTCTCTTCCCCT
TCTTTCTAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_m18.b1 MSMg01no319_m18.b1 CHROMAT_FILE:
MSMg01no319_m18.b1 PHD_FILE: MSMg01no319_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:11 2005
         (174 letters)



>mm_chr13_80102473_80103046
          Length = 574

 Score =  329 bits (170), Expect = 7e-95
 Identities = 173/174 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaagaaaccatctcctcatggttttgaaatataactgcttggtctctaaaaagtgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaagaaaccatctcctcatggttttgaaatataactgcttggtctctaaaaagtgatg 260

                                                                       
Query: 61  caacacacagaaacaaacaaacacagatttaacttatgtccaaaaacatattctgatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacacacagaaacaaacaaacacagatttaacttatgtccaaaaacatattctgatata 320

                                                                 
Query: 121 tttgattcaaatttattttttatatattaccactccattatacatcatttggaa 174
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 tttgattcaaatttattttttatatattatcactccattatacatcatttggaa 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)