BAC Information

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BAC

Clone NameMSMg01-320D21
Chromosome13 (Build37)
Map Location 109,607,635 - 109,607,944
singlet/doubletsinglet
Overlap genePde4d
Upstream geneZswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, EG668144, LOC621663
Downstream geneLOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320D21.T7 (MSMg01no320_d21.b1)MSMg01-320D21.TJ (MSMg01no320_d21.g1)
ACCAG439531AG439532
length726775
length of high quality
(start - end)		324 (27 - 350)---
definitionCHROMAT_FILE: MSMg01no320_d21.b1 PHD_FILE: MSMg01no320_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:43 2005CHROMAT_FILE: MSMg01no320_d21.g1 PHD_FILE: MSMg01no320_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCAATACGACTACTATAGGCAGAGGATCCGCGGAATTCACCAAT
GGTCGAAACTTTATTTTTGCAACCCTTACACCTTCCATAATCCTCTTCAG
GGCTCCAATTTCACGAGCAGGAGGCAAGAAGTAACTCAAATTCAACAAAT
AATCATGGAGCTTCCACCCTCTTCCACATACTTTGAACTCATTCTCTGAC
TAATTTTCCACAGGTAGCACAGTAAGTTACCCCTTTTATGTCCTCTCCTC
TGGAGTGAACATGTATTATTTCTGTCTGCCAGGCGCTTATGTTTACCTTT
CCCCGGCAATACCTACCATACCTACTATTTCTATCAGGGGTGACAGGGTT
TACNCTGGCCTCAATTATCAAANCCCGCTTAATGATAGTGGTTTTTCTCT
CCCTTTTGTTCACATAAAAAAACAAATGACTCNGGACGGCCCCCAAATCC
ATCAGTAGGATTATTAAATACTAAATTGAAAGGGACAAAAGACTCTCTTT
CCCTTCAGGATGCTTGAGAGAGGTACTGAATAGCAGTAATAGTCTTGATG
TTTGCCAGCTTTAGTTGTTTTCTTGCCTCATAAATCCACTTGTGGTCAAT
GCAGATGGGAACGACACAGAGAGGAAAGTAGATCTGAGCATGATTGAACC
CTCATGTCACATATACACAACGGTGCTGTCATACTCAGGTGACATAAACA
CATAAACACAAGGGGTTATGGTTCTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCCTCGCAAAAAAC
ACCCCCCCAACCCCAATCCTATTTATCTTTTTTTCTCCCTCTCTCTCTAT
TTAAAAATATCACCACCCCTCCTCCGTCTGTCCTCTTCTCCTTTTCTATT
TTTGGCGGCTTGGCTCTCCCTTCCCTTCCTTATACTTATTCCCTCCTTCT
CGTGTTTNNNNNNAACCTATAGTAAGGGATCCCGCGGGAAATTCTTTGGT
NTTTTTAAGGCCCTTCCCTTGAAATTCCCCCCAGTTTTTTTTTAAATGGC
GGGGTTTATTTTTGGTAATTTTCCCGGGAGATCCAAGCCTTCTTTGAAGC
CTCTTTTGTAATATAATTGGGGATTAGTTTAGTCCCCCCTAATTCCAGAA
TTTTAGGGAATTGGGGTAAAAAAAATACCCTTTTTCCCCCAATCCCGTGG
TTGGGGGGGGAACCCTTTTTCTTGGGCCCCTAATTGGGGAAAAAAGGGGC
CCCCTTTTTTGGGCCCCTTTTTAAACAAAAAAAAACCTCTTTTTTGCCAT
ATCTTTTTTTTTTTGGGGGAGGGGGGCCCCCCCATTTTCTTTTGGGAAAC
AAAATCCCCTTGGGGGCTCCTTTTACGCCGGCCGAAAAAGCGCCCCCCCG
GGCGGGCGGTGGTTTCTTTGTTTTTTTTAAAAAAATAATTTATTCTTTCT
CCCCCCTGGGGGGGGCACCCCCACAAAAAACACCACCCAAGGGAAGGTGG
GGNCGCGCCTCCCACCCCCCTTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_d21.b1 MSMg01no320_d21.b1 CHROMAT_FILE:
MSMg01no320_d21.b1 PHD_FILE: MSMg01no320_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:43 2005
         (324 letters)



>mm_chr13_109607423_109608146
          Length = 724

 Score =  576 bits (298), Expect = e-169
 Identities = 307/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 13  gaattcaccaatggtcgaaactttatttttgcaacccttacaccttccataatcctcttc 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaattcaccaatggtcgaaactttatttttgcaacccttacaccttccataatcctcttc 463

                                                                       
Query: 73  agggctccaatttcacgagcaggaggcaagaagtaactcaaattcaacaaataatcatgg 132
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 agggctccaatttcaagagcaggaggcaagaagtaactcaaattcaacaaataatcatgg 403

                                                                       
Query: 133 agcttccaccctcttccacatactttgaactcattctctgactaattttccacaggtagc 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agcttccaccctcttccacatactttgaactcattctctgactaattttccacaggtagc 343

                                                                       
Query: 193 acagtaagttaccccttttatgtcctctcctctggagtgaacatgtattatttctgtctg 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 acagtaagttaccccttttatgtcctctcctctggagtgaacatgtattatttctgtctg 283

                                                                       
Query: 253 ccaggcgcttatgtttacctttccccggcaatacctaccatacctactatttctatcagg 312
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 282 ccaggcgtttatgtttacctttccccggcaatacctaccatacctactatttctatcggg 223

                     
Query: 313 ggtgacaggg 322
           ||||||||||
Sbjct: 222 ggtgacaggg 213


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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