BAC Information

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BAC

Clone NameMSMg01-320G16
Chromosome13 (Build37)
Map Location 80,490,858 - 80,491,130
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320G16.T7 (MSMg01no320_g16.b1)MSMg01-320G16.TJ (MSMg01no320_g16.g1)
ACCAG439654AG439655
length724710
length of high quality
(start - end)
---272 (433 - 704)
definitionCHROMAT_FILE: MSMg01no320_g16.b1 PHD_FILE: MSMg01no320_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:55 2005CHROMAT_FILE: MSMg01no320_g16.g1 PHD_FILE: MSMg01no320_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTGTTTATCTCTGTACCCCATTTTTCAGAGGACTAATTGAATCC
CTAGAGTCTATCTTCCTCACAATATACTGCATATTAGGACTCTATCTGAT
GCAGGATATGATAAAGAACTTTTCCCAATATGGTGAAAGACTTTTAGGCT
TATGAAAAAAGCACTTTGCCCTACATAATATATTCAAATACTGATTACGC
CTTTTGCCAATTGCTGATCTCACTGATTGATTCATAGACGTTCACTGAAG
AAATCTATTGCATGATCGATTGCGAAATGAGAGATTTCTGCTACCTGTTC
TATTGTTCTTACCGCCCCCCACTCACTATGGATGTCATTATGATCAGACT
GTATTTACATGTGAAGGATATCAATAATAAXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTATCTATTAACCATAAAAAG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGGTGTTCAGATCTGGAATGAA
AACTTATGGAGCATTATTTCCTTTAGAATCACCTGAAAAAATTTATTGCA
GAGAAGATGGAAAGCTCACACCAAAGGAAAAAGAGAACATGAAGAAAGGG
CTTAAGAACAAGACAAGACACAGTCAAGAAGGAGAAATTCAAGCATAGGA
GTAAGAATGCAGACAGAATATAACAAGAAGAAAGGGTGGCTTCAAAGGTG
TTTTCCCAGGAAAACCATGATAACGAAAGTCAAGGCTAAGTAAGGGGAGC
AAATCTTTCCATTTATTTCCCGNCCTTACCTTATGAACTTTTAAATATGA
GGTCAAGAGAGAGCTTACACCAAAAAGAAACTGAGATTATTTAGTCAAAA
CTGATCAAATGATCATAAATGGATGTATGAAAACAGATGAAAGTCGATAA
AATCTCACAATAATGTAGTTTTATATTTAAGTTTTACTATACAGTATTTT
TATCCACTAATTCTCAAACAAAATTATCTTTACTATATCTCCGATTTCCT
TAATTTTGTCATTGATAGTCATTTAAAGACGATAACTTATAGCACTAAGT
TATAATGATTGACATTGAAATAATTTATTGGTTCCTCAATAATATATTTT
TAGTTTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_g16.g1 MSMg01no320_g16.g1 CHROMAT_FILE:
MSMg01no320_g16.g1 PHD_FILE: MSMg01no320_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:55 2005
         (272 letters)



>mm_chr13_80490658_80491330
          Length = 673

 Score =  458 bits (237), Expect = e-133
 Identities = 264/273 (96%), Gaps = 1/273 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagattatttagtcaaaactgatcaaatgatcataaatggatgtatgaaaacagatgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gagattatttagtcaaaactgatcaaatgatcataaatggatgtatgaaaacagatgaaa 414

                                                                       
Query: 61  gtcgataaaatctcacaataatgtagttttatatttaagttttactatacagtattttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 413 gtcgataaaatctcacaataatgtagttttatatttaagttttactatacagtatttcta 354

                                                                       
Query: 121 tccactaattctcaaacaaaattatctttactatatctccgatttccttaattttgtcat 180
           || ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 353 tctactaattctgaaacaaaattatctttaatatatctctgatttccttaattttgtcat 294

                                                                       
Query: 181 tgatagtcatttaaagacgataacttatagcactaagttataatgattgacatt-gaaat 239
           ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 293 tgatagtcatttaaagatgataacttatagcactaagtgataatgattgacattagaaat 234

                                            
Query: 240 aatttattggttcctcaataatatatttttagt 272
           ||||||||||||||| |||||||||||||||||
Sbjct: 233 aatttattggttccttaataatatatttttagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 673
Length adjustment: 9
Effective length of query: 263
Effective length of database: 664
Effective search space:   174632
Effective search space used:   174632
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)