BAC Information

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BAC

Clone NameMSMg01-320H13
Chromosome13 (Build37)
Map Location 68,778,619 - 68,778,900
singlet/doubletsinglet
Overlap geneAdcy2
Upstream gene3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik
Downstream geneLOC666205, LOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320H13.T7 (MSMg01no320_h13.b1)MSMg01-320H13.TJ (MSMg01no320_h13.g1)
ACCAG439694AG439695
length722724
length of high quality
(start - end)
312 (45 - 356)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no320_h13.b1 PHD_FILE: MSMg01no320_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:59 2005CHROMAT_FILE: MSMg01no320_h13.g1 PHD_FILE: MSMg01no320_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTGAGGAATATTGAATGGCCAAGAAGCACCTAAAGAAAAGTT
CAGCATCTTTAGTCTTCAGCCAAATGCAAATCAAACTGAAAGACCCGAGA
GGAGCTCCTCACTCAGGCCTCAGGACAATAGTGGACCCCCAAGAACTCAG
GAGAGACCAAGCTTGATGTAAAAAACATGAGGCTTTATTCAGGGAAATCC
CGAGCTCTGGGGATGACTCATATTCCACACAGGATAGGAGGAGACACCCA
AGAGAGGAAGGGGGTCCCAGATTTTATAGGCCCTCAGGGGGGAAAGGATA
AGGGGGTTGTATGGCATCCCCCGCATCAAACAATGTTTATTCTCAACAAA
TGGGTATGGGAGGGGTATAAGGAAAGAGTTTGAGCAGGTGTAGCAACTCA
AGATTAGCCCTGCTGTGGTTTCTGGGGAGATTTTTCGACTCTTTCCCAGC
AACCAATATCACAAACTCCTGGCAGTGAGGTGCAACAGTGGGCAACCACC
TGGGTTCAAGGAACTGTCAAAACATTGGCAGATACACGGATTCAAGGAGT
GGCCACAGCATTGTGCACCTCTATATTTCTAAATCAGTGAAGCTACAATG
AAATCTATTTTGCCAATTTCAGGGCTTCTGTGACCTTTTACATTCTGTCA
GGATCTTTCAAAACCACCTCAC
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGATAGGAAGGGCTGAGTTCCA
CAGGCTCAGCTCATGTCTACCTCCATTGGGAGAGAGGAAACACAATCTGA
GCCTTGGCAAATCCTCCAGAAGTGGCAGGAAGGTATGTTCCCTTCCTAAC
ATTCATGGACAAATGAAAGAGTAATTCTGAGGCAAGAGTTGTCTTACGGT
TGGAGTTTCTAAGGCTCTGGTGAAATGCCATGACCAAAAATAACATGGTG
AGGAAATGGTTAATTTCATCTTAAAGTTTGTAGTCCCATCATCCAGGAAA
GTCACGTCTGGTACTTTGCCCCCAACTGCCCCCAGTCAATGATATATAGG
CCATGGTGGAATTCTGCTTACTGAAAAAGATCATCCCACTTTCTTACACC
ATCCGGGACTACCTGCTCAAGGATGACACCATACGAAGCAGTCTGGACCC
TCCCATATCAATCAGTCAAGAAAATGCCTTCACATACTTTCCTTCAGGCC
AGTCTGGTGGAGGCATATTTTCGACTGAGAGTCCCAAACAAAGAGTCATA
TGGACAAAGAAACAGAAAACTAACTAGCTGAATTTGTTGCTTTTCTAACT
GTGAGGAAATTCCATGACCAAGGCAACTTATAAAAGATAGCCTTTAACTA
GGGGCTGGCTTACAACTTTGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_h13.g1 MSMg01no320_h13.g1 CHROMAT_FILE:
MSMg01no320_h13.g1 PHD_FILE: MSMg01no320_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:59 2005
         (283 letters)



>mm_chr13_68778538_68779220
          Length = 683

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagataggaagggctgagttccacaggctcagctcatgtctacctccattgggagagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agagataggaagggctgagttccacaggctcagctcatgtctacctccattgggagagag 304

                                                                       
Query: 61  gaaacacaatctgagccttggcaaatcctccagaagtggcaggaaggtatgttcccttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gaaacacaatctgagccttggcaaatcctccagaagtggcaggaaggtatgttcccttcc 244

                                                                       
Query: 121 taacattcatggacaaatgaaagagtaattctgaggcaagagttgtcttacggttggagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 taacattcatggacaaatgaaagagtaattctgaggcaagagttgtcttacggttggagt 184

                                                                       
Query: 181 ttctaaggctctggtgaaatgccatgaccaaaaataacatggtgaggaaatggttaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ttctaaggctctggtgaaatgccatgaccaaaaataacatggtgaggaaatggttaattt 124

                                                     
Query: 241 catcttaaagtttgtagtcccatcatccaggaaagtcacgtc 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 catcttaaagtttgtagtcccatcatccaggaaagtcacgtc 82


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)