Query= MSMg01no320_h19.b1 MSMg01no320_h19.b1 CHROMAT_FILE:
MSMg01no320_h19.b1 PHD_FILE: MSMg01no320_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:00 2005
(246 letters)
>mm_chr13_10615089_10615734
Length = 646
Score = 350 bits (181), Expect = e-101
Identities = 221/242 (91%), Gaps = 13/242 (5%)
Strand = Plus / Minus
Query: 5 gaattcattactaggagtgaggtggtcaacttgcatgattcagaaaccttgcaattcttc 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gaattcattacaaggagtgaggtggtcaacttgcatgattcagaaaccttgcaattcttc 307
Query: 65 cccacatataacggaaaggatcgggaagtcagagagactagatgctgaaatgggtctagg 124
|||||| | || |||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 306 cccacagagaagggaaaggatcaggaagtcagagagactagatgttgaaatgggtctagg 247
Query: 125 cctctccacgtgacaaagcaccagtatttctagtatggtgggttgtttgtttgtttgttt 184
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 246 cctctccacatgacaaagcaccagtatttctagtatggtgg---gtttgtttgtttgttt 190
Query: 185 gttttgttgttgttgttgttgtttgttttttgntttatctactctccaataaaatcaatg 244
|| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 189 gt----------ttgttgttgtttgttttttgttttatctactctccaataaaatcaatg 140
Query: 245 gt 246
||
Sbjct: 139 gt 138
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no320_h19.g1 MSMg01no320_h19.g1 CHROMAT_FILE:
MSMg01no320_h19.g1 PHD_FILE: MSMg01no320_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:00 2005
(281 letters)
>mm_chr13_10443693_10444376
Length = 684
Score = 511 bits (264), Expect = e-149
Identities = 278/284 (97%), Gaps = 3/284 (1%)
Strand = Plus / Plus
Query: 1 ctcagtgcttaattgctctgctatgaagggaggtagttgaactgtgtgagctctgttctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcagtgcttaattgctctgctatgaagggaggtagttgaactgtgtgagctctgttctg 260
Query: 61 ctaatttaaagattctgagtctatgatatgcacgatagtttaaatataactctccgcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaatttaaagattctgagtctatgatatgcacgatagtttaaatataactctccgcttg 320
Query: 121 tcctgtcatatgtgacattcctttgtaagcttactccccccc---tttatgttcaagatc 177
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 321 tcctgtcatatgtgacattcctttgtaagctcactcccccccccctttatgttcaagatc 380
Query: 178 aatgtctcttatatagtcctacaagcataattactgctaaaatattgattgttttcaaat 237
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtctcttatatagttctacaagcataattactgctaaaatattgattgttttcaaat 440
Query: 238 gtaaatctacagctcatcattctctgaactgtttctggattata 281
||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 gtaaatctacagctcatcattctctaaactgtttctggattata 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 684
Length adjustment: 9
Effective length of query: 272
Effective length of database: 675
Effective search space: 183600
Effective search space used: 183600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
