BAC Information

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BAC

Clone NameMSMg01-321A13
Chromosome13 (Build37)
Map Location 30,997,663 - 31,161,258
singlet/doubletdoublet
Overlap geneExoc2, Hus1b, EG432743, LOC100041257
Upstream geneE2f3, Mboat1, Agtr1a, Uqcrfs1, Dusp22, LOC666443, Irf4
Downstream geneLOC100041266, G630018N14Rik, LOC100042491, Foxq1, LOC100041312, Foxf2, Foxc1, 4930548F15Rik, Gmds, LOC666212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321A13.T7 (MSMg01no321_a13.b1)MSMg01-321A13.TJ (MSMg01no321_a13.g1)
ACCAG440113AG440114
length726730
length of high quality
(start - end)		231 (428 - 658)594 (74 - 667)
definitionCHROMAT_FILE: MSMg01no321_a13.b1 PHD_FILE: MSMg01no321_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:41 2005CHROMAT_FILE: MSMg01no321_a13.g1 PHD_FILE: MSMg01no321_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,161,049 - 31,161,258)(30,997,663 - 30,998,249)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACAAGAGAACTCTAAAGTTGGCTCATGCTAAAGATATACTGTGGGGT
ACCAACCTTTAGTCACTCCCTGCTTTGATGCATCCCTCTCTGGCTCTGCC
TTTTCTTACTTTATCTCCAAGCAGAACAAAATTCTGTGTAAAAGAAAATA
AAATCTACAACCTCTATGTCTAAATGTAGATGAAGAAGAAAACCTATAGT
ACATTAAAAATAAAATTATCCCTTGCTAAAGCCCCCATCCCTATTGATCA
GTATTGAAATGGGAAACGATATAAATCTAATGCTGTAGAACAACCTTTAC
TTTTGATTTTTTTCCCACCCCACCACCCTTCCTTACATCTTGAAGATACA
GACATGTAAACTCCCTACTTTGTTTTGCCAAAAATACACTCTGACTATGT
CATATGTGTTCACAATTGCTGTTTTCATGTACTTTGTTTTATGTGGCATA
AAACTTAATCTGCTCCTAATCTAAAAATAAGAGAGTTAAAAGAAAAGCAG
TCACTTCATTTTACAATTTTTTAGCTTACTGAGCTCTAAAATTATTACTC
TTGACATTCCTAATTTAAGATGTGTGTGTGTGTGTGTGCGCGTGTGTGTG
TGTGTGTGTGCCTTCTCCCTTCCTATTATATATTCCCATTCCTCCCTTTT
TCTTTTTTTTTCCTTCTTTCCTTTTT

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAATCAAGTTTCAGAAAGCAGAATTC
TGGTTGCTTTTTGACTGAGAAGAGACACAAGGGACCTTTGTGGAGGGATC
AAAACACACCATCTCAAGTGTATAGGAGGCATGAGCGTTTGTCAGAGTTC
AGTGACCTGTAACATGTAAGGTCTGTGCATTTCACTGCATGCAAATTTCA
CCACAGTAAAGAAATAAATTCTGCATTTTGAAACCTTATGGATTTCATTC
TTTTAAATTTAGTATTACCTGTGGTATTTCTCCTAGTTAATAAGTTTTTA
ACCATAAGCTACCTAAGCTTTTATTTTCTGTAAACCTGGTATAGAGTAAT
TTTTTCAAAGTATTGAGTTTGCTTTAGAGTAAGAGTAGAACTCATAAATG
CACTGTTTTAGCTTGAAGAGGGGAGACTGAAATGCAGATTTCCATGTCTG
TGAAAAACTTACCATTGCTTCTCTCTAGTATGAAAGTTTTTAACGCATTG
TGATTAAAAAACAGCAAAGCATCTGAGACTGGCCCTCGCCACGGACGTGC
ATTCCCACCACACAGCAGTAGGAAAACCCGCGAGGTTAGTTTGCACTGAT
TGTTTTACATCTTACAGAAGAACCATATAAACCAGATCTCAGAGGCAAGC
AGCGCTCTGCAGCATAGACACTCACTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_a13.b1 MSMg01no321_a13.b1 CHROMAT_FILE:
MSMg01no321_a13.b1 PHD_FILE: MSMg01no321_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:41 2005
         (231 letters)



>mm_chr13_31160866_31161496
          Length = 631

 Score =  383 bits (198), Expect = e-111
 Identities = 207/210 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaaaaatacactctgactatgtcatatgtgttcacaattgctgttttcatgtactttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ccaaaaatacactctgactatgtcatatgtgttcacaattgctgttttcatgtactttgt 334

                                                                       
Query: 61  tttatgtggcataaaacttaatctgctcctaatctaaaaataagagagttaaaagaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tttatgtggcataaaacttaatctgctcctaatctaaaaataagagagttaaaagaaaag 274

                                                                       
Query: 121 cagtcacttcattttacaattttttagcttactgagctctaaaattattactcttgacat 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 273 cagtcacttcattttacaattttttagcttactgaactctaaaattattactcttgacat 214

                                         
Query: 181 tcctaatttaagatgtgtgtgtgtgtgtgt 210
           |||||||||||||||| | |||||||||||
Sbjct: 213 tcctaatttaagatgtatatgtgtgtgtgt 184


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no321_a13.g1 MSMg01no321_a13.g1 CHROMAT_FILE:
MSMg01no321_a13.g1 PHD_FILE: MSMg01no321_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:41 2005
         (594 letters)



>mm_chr13_30997463_30998456
          Length = 994

 Score = 1011 bits (523), Expect = 0.0
 Identities = 571/587 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatcaagtttcagaaagcagaattctggttgctttttgactgagaagagacacaaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaatcaagtttcagaaagcagaattctggttgctttttgactgagaagagacacaaggg 260

                                                                       
Query: 61  acctttgtggagggatcaaaacacaccatctcaagtgtataggaggcatgagcgtttgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctttgtggagggatcaaaacacaccatctcaagtgtataggaggcatgagcgtttgtc 320

                                                                       
Query: 121 agagttcagtgacctgtaacatgtaaggtctgtgcatttcactgcatgcaaatttcacca 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagttcagtgacctgtaacacgtaaggtctgtgcatttcactgcatgcaaatttcacca 380

                                                                       
Query: 181 cagtaaagaaataaattctgcattttgaaaccttatggatttcattcttttaaatttagt 240
           ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
Sbjct: 381 cagtaaagaaataaattctgcgttctgaaaccttatggatttcattcttttaaatttaat 440

                                                                       
Query: 241 attacctgtggtatttctcctagttaataagtttttaaccataagctacctaagctttta 300
           |  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 aagacctgtggtatttctcctagttaataagtttttaaccataagttacctaagctttta 500

                                                                       
Query: 301 ttttctgtaaacctggtatagagtaattttttcaaagtattgagtttgctttagagtaag 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 501 ttttctgtaaacctggtatagagtaattttttcaaagtactgagtttgcgttagagtaag 560

                                                                       
Query: 361 agtagaactcataaatgcactgttttagcttgaagaggggagactgaaatgcagatttcc 420
           ||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||
Sbjct: 561 agtagaactcataaatgcactgttttagcctgaagagaagagactgaaatgcagatttcc 620

                                                                       
Query: 421 atgtctgtgaaaaacttaccattgcttctctctagtatgaaagtttttaacgcattgtga 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 atgtctgtgaaaaacttaccattgcttctctctagtatgaaagtttttaatgcattgtga 680

                                                                       
Query: 481 ttaaaaaacagcaaagcatctgagactggccctcgccacggacgtgcattcccaccacac 540
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 ttaaaaaacagcaaagcatctgagactggccctcgccacggatgtgcattcccaccacac 740

                                                          
Query: 541 agcagtaggaaaacccgcgaggttagtttgcactgattgttttacat 587
           ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 741 agcagtaggaaaacctgtgaggttagtttgcactgattgttttacat 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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