BAC Information

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BAC

Clone NameMSMg01-321N03
Chromosome13 (Build37)
Map Location 77,115,773 - 77,266,690
singlet/doubletdoublet
Overlap geneMctp1, Ankrd32
Upstream geneSpata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, LOC666603, EG666607
Downstream gene2210408I21Rik, LOC631139, LOC675063, D13Mgi7, 1110033M05Rik, 1700013G10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321N03.T7 (MSMg01no321_n03.b1)MSMg01-321N03.TJ (MSMg01no321_n03.g1)
ACCAG440688AG440689
length768735
length of high quality
(start - end)
370 (46 - 415)238 (129 - 366)
definitionCHROMAT_FILE: MSMg01no321_n03.b1 PHD_FILE: MSMg01no321_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:39 2005CHROMAT_FILE: MSMg01no321_n03.g1 PHD_FILE: MSMg01no321_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,266,324 - 77,266,690)(77,115,773 - 77,116,007)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATTTATATTCTCTACTTGTCTCCAGACTACCTAATTTAAAGAAAC
ATATATTCAAATTAGAAGATCTATGAATTAGATAACACCTTAAACACAAA
GTACTTTGTGAATTTTATTTCATGAGTTGAAGTCCCATGAAAATAAAGTT
AAGTTAAAACCATGTGGTTTTTCTGTTTACCTTTTGATGTAATTAGTATA
TATATCAGAGATATATTGTGGTATGTTGAACACACAAACATATCAGGGAG
GCTGTGTGGAGGGTGGGAAGAGAGGAAGAAATTAGAGATGTAGGTTGGAA
ACAAAAGTTGCAGTCTTATATTAAAACTATTAATATTAAAGTTATTTAGT
ATAAATACTGTAGAAATATGACCCCCGCCAGCAATTATGCTCATATTTAC
ATAGGCCTCTATTGCTGTGTAAACAATAATATTCAATGCTGCGTTTTAAT
GGAAAATAGTATTATACTGGAGGGTTTCAATGTCGAATTAACAATTTAAA
CTCACTTTTATTGTTTTGAATAACTCAGCCCGAATACGTTTTTTCACCGT
ATTTAACTATATTTTACCATTAGCTGTTTTTTATGTAAGCCCTATCATTG
TCTTAATTCCCTATTACCGCCCCCTGCGTAGTTTCTTTTCCACCCCCAAT
GTTCCTTCAACGTCAGTATATTTTTTTTCGGTCCCCCTTTTATTGTTTTA
ATTGTTTTCAACTCCCCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTGCCAAATTCCAGCCTCTGACATTGTCCTTGACATTGC
TCAATTAAAACTTACACTTAAACCCCTAAATTGAAAGGAGACTGGAGTGA
TGGAATCGGAGGCATTAGCAAGAAACATTGTTCATTTTTCCCTTGGGTAT
TCCTTTTATTTTCACTTTCCATATGAAGTTCCTATTTTATAATTGGGAGG
CAATATCAGTGCAAGAACACTGCATCCTAAAAGATTCATGCTCTTTGGGC
CAGGCTCCTCTAGAGAGGAATGAATCTCTGTTTTAATGAGTATCAGTGAG
TATTGCGTCTGATTTGTTTTGTTCACGCCCCCCCCGGGATGGATGGTGCA
TGCTGTATGGAAGTGTTTCCCCACCCATCAAAAGAAAATTGGAGAGGTAC
ATGGGGAACCATTTGAATGCTGATTACAATATCACTCTGCGGATTGAAGA
AATCACAGAACTTGTATTAGAATTGTGTGAGTAAACAGATAACAGTTGAG
ACATTTTCTGTAAAATTGACCTTGTTTTGTATCTGAGGTTTTGACTACAG
ACAGCTCTTAGATCCACTTCACACTTGCTGAGCTATCTCCACAGCCCTTT
GTGACTCTATCTGCTAAGTAAAGCTGATAGGATAGCCTTTGAATTGCCAC
TTGTAAGATGTGTCCCCAAAACACTTAAAGTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_n03.b1 MSMg01no321_n03.b1 CHROMAT_FILE:
MSMg01no321_n03.b1 PHD_FILE: MSMg01no321_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:39 2005
         (370 letters)



>mm_chr13_77266171_77266940
          Length = 770

 Score =  687 bits (355), Expect = 0.0
 Identities = 364/367 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattccatttatattctctacttgtctccagactacctaatttaaagaaacatatattc 63
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattccatttatatgctgtacttgtctccagactacctaatttaaagaaacatatattc 461

                                                                       
Query: 64  aaattagaagatctatgaattagataacaccttaaacacaaagtactttgtgaattttat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aaattagaagatctatgaattagataacaccttaaacacaaagtactttgtgaattttat 401

                                                                       
Query: 124 ttcatgagttgaagtcccatgaaaataaagttaagttaaaaccatgtggtttttctgttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttcatgagttgaagtcccatgaaaataaagttaagttaaaaccatgtggtttttctgttt 341

                                                                       
Query: 184 accttttgatgtaattagtatatatatcagagatatattgtggtatgttgaacacacaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 accttttgatgtaattagtatatatatcagagatatattgtggtatgttgaacacacaaa 281

                                                                       
Query: 244 catatcagggaggctgtgtggagggtgggaagagaggaagaaattagagatgtaggttgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 catatcagggaggctgtgtggagggtgggaagagaggaagaaattagagatgtaggttgg 221

                                                                       
Query: 304 aaacaaaagttgcagtcttatattaaaactattaatattaaagttatttagtataaatac 363
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 220 aaacaaaagttgcagtcttatattaaaattattaatattaaagttatttagtataaatac 161

                  
Query: 364 tgtagaa 370
           |||||||
Sbjct: 160 tgtagaa 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no321_n03.g1 MSMg01no321_n03.g1 CHROMAT_FILE:
MSMg01no321_n03.g1 PHD_FILE: MSMg01no321_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:39 2005
         (238 letters)



>mm_chr13_77115573_77116210
          Length = 638

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattgaaaggagactggagtgatggaatcggaggcattagcaagaaacattgttcatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattgaaaggagactggagtgatggaatcggaggcattagcaagaaacattgttcatttt 260

                                                                       
Query: 61  tcccttgggtattccttttattttcactttccatatgaagttcctattttataattggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccttgggtattccttttattttcactttccatatgaagttcctattttataattggga 320

                                                                       
Query: 121 ggcaatatcagtgcaagaacactgcatcctaaaagattcatgctctttgggccaggctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaatatcagtgcaagaacactgcatcctaaaagattcatgctctttgggccaggctcc 380

                                                                  
Query: 181 tctagagaggaatgaatctctgttttaatgagtatcagtgagtattgcgtctgat 235
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctagagaggaatgaatcgctgttttaatgagtatcagtgagtattgcgtctgat 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)