BAC Information

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BAC

Clone NameMSMg01-321N07
Chromosome13 (Build37)
Map Location 8,054,927 - 8,055,120
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667611, EG623516, LOC791083
Downstream geneLOC382722, Adarb2, EG666941, Wdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321N07.T7 (MSMg01no321_n07.b1)MSMg01-321N07.TJ (MSMg01no321_n07.g1)
ACCAG440696AG440697
length769765
length of high quality
(start - end)
---194 (75 - 268)
definitionCHROMAT_FILE: MSMg01no321_n07.b1 PHD_FILE: MSMg01no321_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:39 2005CHROMAT_FILE: MSMg01no321_n07.g1 PHD_FILE: MSMg01no321_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATG
CCGCGGAATTCTTATGCTTATTCCCATCGATTAGAGGAGGTATTTTCGGT
TTTTCAGAGCTATAGATGTCATACTCTCTCATGACAGATATCATTATAAC
AGCATATTTAGTTTTCTTGTCATAGACTCTAATTTCTTCACTTTATTAGC
ATTTGGATTCCAGAGCTCTAAAAGGAAAGGCGTGGTAACTGCTGACCATG
ATACACATAAGGGTTTTATATTCTCTGGTTTGTGCGGGAGTGTGTGCGCG
CGCGTGCTTGTACTTTTATTTCGTTGCAGATTTGTTGTTTCACAATAGCT
ACACTATGAATCACTAGGCCAGAATTATGTCTCAGCACAGAGAACAATAT
TATGAGCTCCCAGGTATGAAACTTTTGAATGTACCCCCCCCACTCTTATT
ATAGAGCATATACGGGCTATTCACTTGATTTTATGCGGTATGCAATCTGT
ATGCTCTTGTCACACTATGTATTCTCACTCATCATTCTCTAACAGATATT
ATCTTCACATTCCATATTTCTTTGCTTTGTTCCCGATACCGCTTTTGCTA
TATGGACTTATTTCATCCATCTAAACTGTTGTTCTTTGATATGTTCCCCC
CTTTTTTTACTTTTTTTTTTTCTCCCCGCACTCTCTAATTACCATAATCC
CCCTGTATTTTATCTCGTAAATTTATTATTTTTGCACCGTCTTGGATATT
TTTTATATTACGCACCCAT
NCCGATGATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCTCAGAAATTCACTACGTGACCAATACTGAACCTTGA
ACTCCTCATCCTCTTCTCTTCGCCTTCTAAAAGTTGGGATTGCTGGCGTT
TGCTACCATGCCCGGCTCACAGGGTACTTCATGTCGGTTCCCTTCATTTG
AAGGATAAAACATTTTTGAAAAGAATATTTCATTTCCACAGACATTGTTG
AGCTTACATCAAGTAGAAGAATTTGTAAGTTAAGATCATTATGCAACCCT
TTGAAATTTGTAAGATCTATTTTGTTATGAAAGATTTAGAAAGAAAAGGA
AAGGAAAGGAATTTTTTTTATAGCACCCGACAGGAAAGGAAAGGAAAGGA
AAGTAAAGGAAAGGTTTTTTCCCCCCCCCCAAAAAAAAGGAAAGTACAGG
AATGTAAAGGAAAGGAAAGGATAGGAAAGGAAAGTATATTATAGCATAGG
TCCTGCTAGGTCAGGTAACGACAGGATATTCCCCGTATTTCCCCTACTTT
ACTTCTTTCCTTTACCTCCTTATTTTATTTTTCCCATTTTATCTTATCTC
TTTCTTTTACCTTACTATTTTTACCAATCTTCTCTTAACATTGTTTGTCC
ATTACTATACTCTATTTCTACCTCTTCATATCTATCTACATCTAACTTAT
TTCTCTCCACCCACCCTTCTTTATAATTTATTTATTTCGTTTACTTTTAT
CCTATTATGTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_n07.g1 MSMg01no321_n07.g1 CHROMAT_FILE:
MSMg01no321_n07.g1 PHD_FILE: MSMg01no321_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:39 2005
         (194 letters)



>mm_chr13_8054727_8055320
          Length = 594

 Score =  344 bits (178), Expect = 2e-99
 Identities = 190/194 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actacgtgaccaatactgaaccttgaactcctcatcctcttctcttcgccttctaaaagt 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 actacgtgaccaatactgaactttgaactcctcatcctcttctcttcggtttctaaaagt 260

                                                                       
Query: 61  tgggattgctggcgtttgctaccatgcccggctcacagggtacttcatgtcggttccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattgctggcgtttgctaccatgcccggctcacagggtacttcatgtcggttccctt 320

                                                                       
Query: 121 catttgaaggataaaacatttttgaaaagaatatttcatttccacagacattgttgagct 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catttgaacgataaaacatttttgaaaagaatatttcatttccacagacattgttgagct 380

                         
Query: 181 tacatcaagtagaa 194
           ||||||||||||||
Sbjct: 381 tacatcaagtagaa 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)