BAC Information

Click to search

BAC

Clone NameMSMg01-321O12
Chromosome13 (Build37)
Map Location 3,837,349 - 3,837,682
singlet/doubletsinglet
Overlap geneCalm4, Calm5
Upstream geneLOC667375, LOC544917, LOC236294, Speer6-ps1, LOC674228, LOC667411, LOC100039182, 2810429I04Rik, Gdi2, Asb13, Calml3
Downstream geneLOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321O12.T7 (MSMg01no321_o12.b1)MSMg01-321O12.TJ (MSMg01no321_o12.g1)
ACCAG440750AG440751
length738734
length of high quality
(start - end)
308 (431 - 738)337 (74 - 410)
definitionCHROMAT_FILE: MSMg01no321_o12.b1 PHD_FILE: MSMg01no321_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:45 2005CHROMAT_FILE: MSMg01no321_o12.g1 PHD_FILE: MSMg01no321_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTAATTCTCCAGAACTAAAATTTAAAGACTTGAAACCTAGGAGT
TCACCAGACAGAGAAGTGGCTCCTAACTCAGGGTTGCCAAGTTAGACTCT
GGGGTCCATCTTGGCTTTGACTGTTCCCACACTCAATAAGAACATGATGT
CAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGGAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATTTGTTTTTTGGACCACCACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTACCCCCCCGCATGGAACTGGAGGGCATCATCCTGAGTGA
GGTAACCCAATCACAAAGGAACTCACACAATATGATAAGTGGATATTAGC
CCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGCTAAACGCATG
AAACTCAAGAACGAAGACCAAAGTGTGGACACTTTGCCCCATCTTAGAAT
TGGGAACAAAACACCCATGAAGGAGTTACAGAGACAAAATTTGGAGCTGT
GACAAAAGGATGGACCATCTAGTGATTGCCATATCTGGGGATCCATCCCA
TAATCAGCTTCCAAACGCTGACACCATTGCATACACTA
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGACAGCCATAGAGAAGTACAAGAAA
GGGCACAGAGCAGGGGAGCTGCGGGCTGTGTTCAATGTCCTTGACCAGAA
TGGTGATGGCTACATCACTGTGGATGAGCTCAAGGAAAGCTTGTCCAAGT
TAGGCGAGTCCCTTTCCCAGGAGGAGCTGGAGGACATGATCCGTGTGGCT
GACGTGGACCAAGATGGGAAGGTGAAATATGAGGAGTTTGTGCGCCTCCA
CATTGAAAATTGAGACTGTTGGTCACAAGCTCCAACTCGTCGTCTATCTG
CCTGTCTCTGACAGGCACTTGTGCCTTCTTGCGGAGCTCTGCTTTTGTGG
TGGTGTTTAACACCCCCACAAGTCTGTGTGGTGTATGGAAACTACCTCAT
GAGTGAGGAAGACTTTATTGGCTCTGGATGCTGTGCCATCTGGAGCTGAT
CACTAGTCCCCTCTCTGCCTGCTGAGACTCTGGTCAGAGGATGGTTTCCT
TGGGTGTGTCTCTCCTCTCCCTCTTGCTGTGGAATGGGCGCTTCCTACCT
CCCAGGGCTCTTATAACCCTTTAAATAAAAAGGATGCAAATTCTGTGTGC
TTGGTGTTTAATTACAGAGGAGAATCCCAAGGGCTTCCAAAAATACATAC
TTTGAGCATGTGATCCTTTCCATAGAACTGGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_o12.g1 MSMg01no321_o12.g1 CHROMAT_FILE:
MSMg01no321_o12.g1 PHD_FILE: MSMg01no321_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:45 2005
         (337 letters)



>mm_chr13_3837149_3837885
          Length = 737

 Score =  630 bits (326), Expect = 0.0
 Identities = 332/334 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgacagccatagagaagtacaagaaagggcacagagcaggggagctgcgggctgtgttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgacagccatagagaagtacaagaaagggcacagagcaggggagctgcgggctgtgttc 260

                                                                       
Query: 61  aatgtccttgaccagaatggtgatggctacatcactgtggatgagctcaaggaaagcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtccttgaccagaatggtgatggctacatcactgtggatgagctcaaggaaagcttg 320

                                                                       
Query: 121 tccaagttaggcgagtccctttcccaggaggagctggaggacatgatccgtgtggctgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaagttaggcgagtccctttcccaggaggagctggaggacatgatccgtgtggctgac 380

                                                                       
Query: 181 gtggaccaagatgggaaggtgaaatatgaggagtttgtgcgcctccacattgaaaattga 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 gtggaccaagatgggaaggtgaaatatgaggagtttgtgcgcctccacgttgaaaattga 440

                                                                       
Query: 241 gactgttggtcacaagctccaactcgtcgtctatctgcctgtctctgacaggcacttgtg 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactgctggtcacaagctccaactcgtcgtctatctgcctgtctctgacaggcacttgtg 500

                                             
Query: 301 ccttcttgcggagctctgcttttgtggtggtgtt 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttcttgcggagctctgcttttgtggtggtgtt 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)