BAC Information

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BAC

Clone NameMSMg01-322E01
Chromosome13 (Build37)13 (Build37)
Map Location 92,904,448 - 92,905,11292,099,092 - 92,099,719
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAcot12, Zcchc9, Ckmt2, Rasgrf2, Rasgrf2
Downstream geneMsh3, Dhfr, 6430502M16Rik, 4930405M20Rik, Zfyve16, LOC100039070, Spz1, Serinc5, Ppia-ps13_1124.1, Thbs4, EG624619, EG218444
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322E01.T7 (MSMg01no322_e01.b1)MSMg01-322E01.TJ (MSMg01no322_e01.g1)
ACCAG441000AG441001
length715716
length of high quality
(start - end)
670 (46 - 715)628 (74 - 701)
definitionCHROMAT_FILE: MSMg01no322_e01.b1 PHD_FILE: MSMg01no322_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:10 2005CHROMAT_FILE: MSMg01no322_e01.g1 PHD_FILE: MSMg01no322_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:10 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,904,448 - 92,905,112)(92,099,092 - 92,099,719)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGAAATTCACGAGGGAAAAGCAATGAATTTATGGAAGAGCCTGT
TACCATCTATTTTAAGAAGAGTCCTGTTACTAACCTGTGAGATCAGCTAG
AAAAGCACCCTTATCTCTATAACCTTCTGACCCTTTCAGGAAGGCATGAT
CCAGAGATGGTTTCCACCGGATGCAGGAGCTGAGGGCTCACAGAGGCTGG
TCACACACTTACTGGCTGTGGCTTCCTAGATACCCCTTAGATTTCTAGTT
CTTTTCACCCCTTAAAGTCTCACAGAAGGACCTCAATTTGCAGATGTTTG
CGTTTTCTTTAACAATTCAATGACTAATTTCTAAATCGGTCTTTTCTAAA
TCTAGGAAGTTCTTATGGATCACTTATGTGCTTACTGCACATAAACCTTC
CCCCGCTAGGTGCTGGATCCATTAAGGATCTGGCTTTGCTACTAAGAATC
AAGTGAGATGCTCCTAACTATGACATCATCCTCTGGTGAGCACACTGCTA
GCACCAGGTACACCATTCCATACCATCCCAGAACAGTATTGAGGATATCA
ACTTTTGGCCAATATCTGTGGCAGTGAATTTTCATAACTAAAATCCAGTA
TAGGGGCTGGAAAGATGGCTCTGTAGGGCAAAACAGTTATGTATGCATGA
AGACATGAATTAGGN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGGAGACTTAGTACAGCTGAGGGAG
AAGGACTGAGCCTAATGATGGAAAAAGAAATCTCCAAACTGAAATGGAAG
GGACAAAAGGGAAGGAGATGAAGAAATAGCCCAAAGCAAAACACAAAGCA
AAGCGCACCACATGTAAGTACCATGGGAAAATTTCAAAGGGTACAAAATA
CACATAATTACAGCCTCAAACAATGAACTAGAATAAATATTGGCAGTAAG
AATGATAAGACTCTTTTGTATTAAATGATATTCACGAAACTATAATTACA
CAATTCAGTAATTCAATCTTTAGACATGTTCTCAAAATGAGGTGAAAACA
CGCATCCACACATCTACAAATGGTGGTGTCAGTATCATTCACAGTAGTCA
AAGAATGGCAACAACTCAAAAAACCGGTGGATGAATAAGTGGAACATTGT
ATATCCACACCAAAGAATATTATCCCACAATAAAATGCATCAAGTGGCTG
GTACACTACAAACAAATAGAAAAGCCTCCAAAACATTACACTAAGTAAAT
GAAAAAAAAAGGGGGTAACTAACATATTACATGATTTCTTTTATAGGAAA
TGTCCTGAATGGATTAATTTACGGGGATAAGAAAGATATCAGCAACTCAG
AGAAATTGGAGGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_e01.b1 MSMg01no322_e01.b1 CHROMAT_FILE:
MSMg01no322_e01.b1 PHD_FILE: MSMg01no322_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:10 2005
         (670 letters)



>mm_chr13_92904244_92905313
          Length = 1070

 Score = 1247 bits (645), Expect = 0.0
 Identities = 660/665 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgaaattcacgagggaaaagcaatgaatttatggaagagcctgttaccatcta 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 gaattcatgaaattcaagagggaaaagcaatgaatttatggaagagcctgttaccatcta 810

                                                                       
Query: 65  ttttaagaagagtcctgttactaacctgtgagatcagctagaaaagcacccttatctcta 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ttttaagaagagtcctattactaacctgtgagatcagctagaaaagcacccttatctcta 750

                                                                       
Query: 125 taaccttctgaccctttcaggaaggcatgatccagagatggtttccaccggatgcaggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 taaccttctgaccctttcaggaaggcatgatccagagatggtttccaccggatgcaggag 690

                                                                       
Query: 185 ctgagggctcacagaggctggtcacacacttactggctgtggcttcctagatacccctta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ctgagggctcacagaggctggtcacacacttactggctgtggcttcctagatacccctta 630

                                                                       
Query: 245 gatttctagttcttttcaccccttaaagtctcacagaaggacctcaatttgcagatgttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gatttctagttcttttcaccccttaaagtctcacagaaggacctcaatttgcagatgttt 570

                                                                       
Query: 305 gcgttttctttaacaattcaatgactaatttctaaatcggtcttttctaaatctaggaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gcgttttctttaacaattcaatgactaatttctaaatcggtcttttctaaatctaggaag 510

                                                                       
Query: 365 ttcttatggatcacttatgtgcttactgcacataaaccttcccccgctaggtgctggatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttcttatggatcacttatgtgcttactgcacataaaccttcccccgctaggtgctggatc 450

                                                                       
Query: 425 cattaaggatctggctttgctactaagaatcaagtgagatgctcctaactatgacatcat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cattaaggatctggctttgctactaagaatcaagtgagatgctcctaactatgacatcat 390

                                                                       
Query: 485 cctctggtgagcacactgctagcaccaggtacaccattccataccatcccagaacagtat 544
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 389 cctctggtgagcacactgctagcaccaggcacaccattccatagcatcccagaacagtat 330

                                                                       
Query: 545 tgaggatatcaacttttggccaatatctgtggcagtgaattttcataactaaaatccagt 604
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 329 tgaggatatcaacttttggccaatatctgtggcagtgagttttcataactaaaatccagt 270

                                                                       
Query: 605 ataggggctggaaagatggctctgtagggcaaaacagttatgtatgcatgaagacatgaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ataggggctggaaagatggctctgtagggcaaaacagttatgtatgcatgaagacatgaa 210

                
Query: 665 ttagg 669
           |||||
Sbjct: 209 ttagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no322_e01.g1 MSMg01no322_e01.g1 CHROMAT_FILE:
MSMg01no322_e01.g1 PHD_FILE: MSMg01no322_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:10 2005
         (628 letters)



>mm_chr13_92098892_92099919
          Length = 1028

 Score = 1183 bits (612), Expect = 0.0
 Identities = 624/628 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaggagacttagtacagctgagggagaaggactgagcctaatgatggaaaaagaaatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaggagacttagtacagctgagggagaaggactgagcctaatgatggaaaaagaaatct 260

                                                                       
Query: 61  ccaaactgaaatggaagggacaaaagggaaggagatgaagaaatagcccaaagcaaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaactgaaatggaagggacaaaagggaaggagatgaagaaatagcccaaagcaaaaca 320

                                                                       
Query: 121 caaagcaaagcgcaccacatgtaagtaccatgggaaaatttcaaagggtacaaaatacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagcaaagcgcaccacatgtaagtaccatgggaaaatttcaaagggtacaaaatacac 380

                                                                       
Query: 181 ataattacagcctcaaacaatgaactagaataaatattggcagtaagaatgataagactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataattacagcctcaaacaatgaactagaataaatattggcagtaagaatgataagactc 440

                                                                       
Query: 241 ttttgtattaaatgatattcacgaaactataattacacaattcagtaattcaatctttag 300
           |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttttattaaatgatattcatgaaactataattacacaattcagtaattcaatctttag 500

                                                                       
Query: 301 acatgttctcaaaatgaggtgaaaacacgcatccacacatctacaaatggtggtgtcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatgttctcaaaatgaggtgaaaacacgcatccacacatctacaaatggtggtgtcagt 560

                                                                       
Query: 361 atcattcacagtagtcaaagaatggcaacaactcaaaaaaccggtggatgaataagtgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcattcacagtagtcaaagaatggcaacaactcaaaaaaccggtggatgaataagtgga 620

                                                                       
Query: 421 acattgtatatccacaccaaagaatattatcccacaataaaatgcatcaagtggctggta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acattgtatatccacaccaaagaatattatcccacaataaaatgcatcaagtggctggta 680

                                                                       
Query: 481 cactacaaacaaatagaaaagcctccaaaacattacactaagtaaatgaaaaaaaaaggg 540
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 681 cactacaaacaaatagaaaagcctccaaaacattacactaagtaagtgaaaaaaaaaagg 740

                                                                       
Query: 541 ggtaactaacatattacatgatttcttttataggaaatgtcctgaatggattaatttacg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggtaactaacatattacatgatttcttttataggaaatgtcctgaatggattaatttacg 800

                                       
Query: 601 gggataagaaagatatcagcaactcaga 628
           ||||||||||||||||||||||||||||
Sbjct: 801 gggataagaaagatatcagcaactcaga 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)