BAC Information

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BAC

Clone NameMSMg01-322E05
Chromosome13 (Build37)
Map Location 108,012,778 - 108,013,254
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322
Downstream geneLOC100040350, LOC100040366, Apoo, AI197445, LOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322E05.T7 (MSMg01no322_e05.b1)MSMg01-322E05.TJ (MSMg01no322_e05.g1)
ACCAG441008AG441009
length721722
length of high quality
(start - end)		559 (68 - 626)495 (74 - 568)
definitionCHROMAT_FILE: MSMg01no322_e05.b1 PHD_FILE: MSMg01no322_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:11 2005CHROMAT_FILE: MSMg01no322_e05.g1 PHD_FILE: MSMg01no322_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTCATAATCCGGCTCCGTAAAGTCCCTGCTTACTGTGTGACTTTG
GGCAAAGAGAATCACGGATCATTTAACGGCAAGGCAATGTCATCATTGTG
CACGCACCACAGAGTGCTCGTAAATAACAGTGGCTGCAATGGCACTAGGC
ATTACAAATTTATGCTACAATCTTCTGATATGCAGCTCAGCATTGACCAA
AACATTGTTTTGTGTCTCATGAAAGGATCCAACTTTCCCTACAATCAATA
TCCTTGTTTATCCTTGTTTCTAAAATAAAGATGACTTGGACAAAGTCTGT
ACCTGCAGTACTTGGGAAGTGGAGGCAAAAGGATCGGAAGTTCAAGGACA
GGCTCACTACATTTGATCACTTGGTGTGATGACTGATCATAAAATTAAGT
GCTGCTATTTGATACATAGTAAGTGATCATCAACTGGCAATCATAGTTGC
CAGTACTATATTATATAGCATATTACTACTGCTATTACTCAGAATAAGTT
TACACTCAGGTATGCAAAACAGACAGCCATCTACCTAGAATTTGTTCCTA
CAGGTTTAAGGATTGCTCCTTACTAAGGCACTCAATTCATCAATCTCCTA
TCAACATTTACCACTTAATGTGGATGCTGTTTTCAGCTCAGGTAGCTTAA
TAATAGACTAACTTACTCTCA

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTAAAACCTTCTGACCTTGGGTT
TTTTGGGGGCCAGGGGTGCTTTTAATGACTGCTTCTATTTCACTAGGGCT
TATAGGTCTATTCAAATTGCTTATCTGATCTTGCTTTAACTGTGACAGGT
GGTATGCATTGAGAAAACCAACCATTTCTTATAGATTTTTCATTTTTGTG
GAATACAGGTGTTTAAAGCATGTCTTTATGATTCTCTGGATTTCCTCTGT
GTTGGTTGTCATGTGCCCTCTGCTCATTTCTAATTATGCTAATTTGGATA
TTCTCTCTTCACCTTTTCGTTAATTTGGATAAGGGTTTGTCAGTCTTGTT
CATTTGCCCAAACAACCAACTTTTTTGTTTGTTTGTATTTTATTGATTTC
AACCCTCAGCTTGATTACTTCTGGTCATCTACTCCTTTGGGGTGTGATTT
CTTCTTTTTGTTCTAAAGCTTTCAAGTGGGCTCTTAAGTTGCTCATATGA
GAGCCCTCCAATTTTTAATGTTCATAGCTTTCTGCTCTAAACTTGCCTTT
TGGAATTGCCTATAGTGTGACCCATAAGTTTGGGTATATGGAATATTCAT
TTTCACTTGATTCTAGAAAGTATTTTTCTTTCATAATTTTTGCCTTGATC
CATTTCTTTTCATTGATAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_e05.b1 MSMg01no322_e05.b1 CHROMAT_FILE:
MSMg01no322_e05.b1 PHD_FILE: MSMg01no322_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:11 2005
         (559 letters)



>mm_chr13_108012778_108013736
          Length = 959

 Score =  893 bits (462), Expect = 0.0
 Identities = 474/478 (99%), Gaps = 2/478 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccgtaaagtccctgcttactgtgtgactttgggcaaagagaatcacggatcatttaac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 477 ctccgtaaagtccctgcttactgtgtgactttgggcaaagagaatcacgggtcatttaac 418

                                                                       
Query: 61  ggcaaggcaatgtcatcattgtgcacgcaccacagagtgctcgtaaataacagtggctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggcaaggcaatgtcatcattgtgcacgcaccacagagtgctcgtaaataacagtggctgc 358

                                                                       
Query: 121 aatggcactaggcattacaaatttatgctacaatcttctgatatgcagctcagcattgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aatggcactaggcattacaaatttatgctacaatcttctgatatgcagctcagcattgac 298

                                                                       
Query: 181 caaaacattgttttgtgtctcatgaaaggatccaactttccctacaatcaatatccttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 caaaacattgttttgtgtctcatgaaaggatccaactttccctacaatcaatatccttgt 238

                                                                       
Query: 241 ttatccttgtttctaaaataaagatgacttggacaaagtctgtacctgcagtacttggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttatccttgtttctaaaataaagatgacttggacaaagtctgtacctgcagtacttggga 178

                                                                       
Query: 301 agtggaggcaaaaggatcggaagttcaaggacaggctcactacatttga-tcacttggtg 359
           ||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||
Sbjct: 177 agtggaggcaaaaggatcggaagttcaaggacaggctcactacttttgagt-acttggtg 119

                                                                       
Query: 360 tgatgactgatcataaaattaagtgctgctatttgatacatagtaagtgatcatcaactg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tgatgactgatcataaaattaagtgctgctatttgatacatagtaagtgatcatcaactg 59

                                                                     
Query: 420 gcaatcatagttgccagtactatattatatagcatattactactgctattactcagaa 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  gcaatcatagttgccagtactatattatatagcatattactactgctattactcagaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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