BAC Information

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BAC

Clone NameMSMg01-322K01
Chromosome13 (Build37)
Map Location 44,050,188 - 44,050,434
singlet/doubletsinglet
Overlap genenone
Upstream genePhactr1, Tbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432
Downstream geneA730030A06, EG637868, EG667157, Jarid2, Dtnbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322K01.T7 (MSMg01no322_k01.b1)MSMg01-322K01.TJ (MSMg01no322_k01.g1)
ACCAG441273
length727724
length of high quality
(start - end)
---248 (75 - 322)
definitionCHROMAT_FILE: MSMg01no322_k01.b1 PHD_FILE: MSMg01no322_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:38 2005CHROMAT_FILE: MSMg01no322_k01.g1 PHD_FILE: MSMg01no322_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXX
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAGATGGGTCAGTTAAGCCAAGCCT
GATGACTTGAGTCTAATACTCACGACCCGCATTTATGAGAAACCTGACTC
TAGGGTTGGTCTCTGACCTCTGATCACTCTATGCTCATATCGTCAGAAGA
GCTATGGACCAAGGGGGAAGATCTGGACTGCATTTCCTAACCCTGTAATA
AAATATCATTACAGGTTAACTTAGAAAGAAAGGAGTGTCTTTTTTGGTTC
TTTAAGTTGGGAAATCTAATAGCGTGGAGTTAGCTGCGGAGTGTCTTATA
TGACTCATAACACGTCGGAGAGAATGCTTAGCTGGCTGCTCTGAATGGTG
TCATAAAGCCACCAACCCCACCTCACCCGTGACCTCATTCATCTTACTCT
GCTTACCTCCCAAAGGCCTCTTGTCCTGTTACCTATTAACAAATGAACTT
TGGTATTTACTTTCTAACACATGAACTTGGTGTGTAGTCATTCAAATTAC
AGCAAGAATTCACTCTGCCACCCAGGGTAGTATGAATGTGAGGTGTTCGC
TGCTGCAGACAGGTTGTTTACCTTATGTTTCTGGAACATGCGTTCTTCTT
CCTGAAGCCCTTTTTCTCCTGTCCTCCCTGTCATCCTATTTAATAACAAT
AAGCAACTGTATAAGGCTAATCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_k01.g1 MSMg01no322_k01.g1 CHROMAT_FILE:
MSMg01no322_k01.g1 PHD_FILE: MSMg01no322_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:38 2005
         (248 letters)



>mm_chr13_44049989_44050637
          Length = 649

 Score =  447 bits (231), Expect = e-130
 Identities = 243/247 (98%), Gaps = 2/247 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagatgggtcagttaa-gccaagcctgatgacttgagtctaatactcacgacccgcatt 59
           ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 200 ttagatgggtcagttaaggccaagcctgatgacttgagtccaatactcacgacccgcatt 259

                                                                       
Query: 60  tatgagaaacctgactctagggttggtctctgacctctgatcactctatgctcatatcgt 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 260 tatgagaaacctgactctagggttggtctctgacctctgatcactctatgctcataccgt 319

                                                                       
Query: 120 cagaagagctatggaccaagggggaagatctggactgcatttcctaaccctgtaataaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagaagagctatggaccaagggggaagatctggactgcatttcctaaccctgtaataaaa 379

                                                                       
Query: 180 tatcattacaggttaacttagaaagaaa-ggagtgtcttttttggttctttaagttggga 238
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 380 tatcattacaggttaacttagaaagaaaaggagtgtcttttttggttctttaagttggga 439

                  
Query: 239 aatctaa 245
           |||||||
Sbjct: 440 aatctaa 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 649
Length adjustment: 9
Effective length of query: 239
Effective length of database: 640
Effective search space:   152960
Effective search space used:   152960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)