BAC Information

Click to search

BAC

Clone NameMSMg01-322P16
Chromosome13 (Build37)
Map Location 15,709,243 - 15,850,517
singlet/doubletdoublet
Overlap geneGli3
Upstream genePsma2, AW209491, EG665099, LOC670994, EG625121
Downstream geneLOC665157, Inhba, LOC625181, LOC665191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322P16.T7 (MSMg01no322_p16.b1)MSMg01-322P16.TJ (MSMg01no322_p16.g1)
ACCAG441528AG441529
length744749
length of high quality
(start - end)
673 (72 - 744)294 (74 - 367)
definitionCHROMAT_FILE: MSMg01no322_p16.b1 PHD_FILE: MSMg01no322_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:03 2005CHROMAT_FILE: MSMg01no322_p16.g1 PHD_FILE: MSMg01no322_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,709,243 - 15,709,917)(15,850,224 - 15,850,517)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCTTTCCTCTTTCTATGAGTTGTTCAGAATGCATGTGTCCAACTGATA
CCTGGAATGTCTCTTTCTCAAGTTGTAATAATCCCCAATTCTATGTAAAG
TTAAACACAGTGTTTTAGAAAAATCACCAAAGTCCACTTAGCATATTGCT
GAGCCCATCTGGTGCCTCTGTGATATCCCTGAGCCCGGACACACACTGCA
GAAGAGAACGGGAAACGTGTCCAGTCCTCTCTTTGTTCCCTGGCTTGAGC
TGTTTACACCAGGGCTCTATAACCCTGTGGTCACACTGTTCTATGCTGTG
GGCCTTGATAAAGCCCTCTAGACTACATGTTACTACTGGGTTTTAAAACT
TCTTTAAAAATGGAGACAGTTGTTCAGTTATATCTTACTATACTCAGATA
TTCAAGTGATTTTTTTTTTACAGCCACAAAGAATGTGCTACTGCATTTTG
AGTTTGTGAACATTTTGAGTTTGTATGTACATTTGAGTGTGTGCATTTTG
AGTGTTTGTGAGTTTTGAGTGTGTGTATGTTTTAAGTGCTGGAAGTTACT
TGATCATGTTTCATTTCAAAAGTAGGCATGATGTATTTTTAGAAACTCAA
ATTATAAAGACTTTTGAATTCTAGTATGATTTCATTCACATTCTTGTGGG
GTTTCCAGGGTGTGTTGATATCTATTCTGTATGTAAAAACTCTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGAACCCTGTATTTGGAAGCACAGCA
ACAATGTTCAGCCTTGTCCTGATGCCCACTGGCATCCTATATAATTCATT
CTGTCCTGATTATCTTGTTAGGTAGATGAGACAATTGGGGCTCCACAGCT
AAAGTAAGTGGTAAGTAGAAAGGAGCCCCCCTCTCCATGTCCAGGTAACT
CAGGCACTTGCCTTTGCCCTCAGAGAGGGGCAGCTTTGTCATCAGGTTCC
TCTGACCAGTTATGGCTAGGACTTCATTTCCTAAACAGGATGAAGCTATG
TTCTGGCATATTCTGAGAGGTTCTGGACAATGGATCTATATCCCCAACAC
CGCATCCCGACTATCACAATCATACTCCATCCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCC
TCTCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCACTTCCCCCCTCTTTT
TCTTTACTCCTTCCCCCCCCTCACTAACATCTCCTTACCTCTCCTCTTTC
TTTCTTCTTTATTTCTTATCCTCACCTTTCTTTTACCCCCATTTACCCGC
CCCTTTCTTCTCCCCTTTTTTCTTCTCTCTTCTATACTTATCTTTTTTAT
TTCCTCTCTACTCCCTTCTCCTCATTCTTCTTTTCCCCCTTCTTTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_p16.b1 MSMg01no322_p16.b1 CHROMAT_FILE:
MSMg01no322_p16.b1 PHD_FILE: MSMg01no322_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:03 2005
         (673 letters)



>mm_chr13_15709043_15710117
          Length = 1075

 Score = 1270 bits (657), Expect = 0.0
 Identities = 670/675 (99%), Gaps = 2/675 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgttcagaatgcatgtgtccaactgatacctggaatgtctctttctcaagttgtaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ttgttcagaatgcatgtgtccaactgatacctggaatgtctctttctcaggttgtaataa 260

                                                                       
Query: 61  tccccaattctatgtaaagttaaacacagtgttttagaaaaatcaccaaagtccacttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccccaattctatgtaaagttaaacacagtgttttagaaaaatcaccaaagtccacttag 320

                                                                       
Query: 121 catattgctgagcccatctggtgcctctgtgatatccctgagcccggacacacactgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catattgctgagcccatctggtgcctctgtgatatccctgagcccggacacacactgcag 380

                                                                       
Query: 181 aagagaacgggaaacgtgtccagtcctctctttgttccctggcttgagctgtttacacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagaacgggaaacgtgtccagtcctctctttgttccctggcttgagctgtttacacca 440

                                                                       
Query: 241 gggctctataaccctgtggtcacactgttctatgctgtgggccttgataaagccctctag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggctctataaccctgtggtcacactgttctatgctgtgggccttgataaagccctctag 500

                                                                       
Query: 301 actacatgttactactgggttttaaaacttctttaaaaatggagacagttgttcagttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actacatgttactactgggttttaaaacttctttaaaaatggagacagttgttcagttat 560

                                                                       
Query: 361 atcttactatactcagatattcaagtgatttttttttt--acagccacaaagaatgtgct 418
           |||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||
Sbjct: 561 atcttactatactcagattttcaagtgattttttttttttacagccacaaagaatgtgct 620

                                                                       
Query: 419 actgcattttgagtttgtgaacattttgagtttgtatgtacatttgagtgtgtgcatttt 478
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 actgcattttgagtttgtgaacattttgagtttgtgtgtacatttgagtgtgtgcatttt 680

                                                                       
Query: 479 gagtgtttgtgagttttgagtgtgtgtatgttttaagtgctggaagttacttgatcatgt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagtgtttgtgagttttgagtgtgtgtatgttttaagtgctggaagttacttgatcatgt 740

                                                                       
Query: 539 ttcatttcaaaagtaggcatgatgtatttttagaaactcaaattataaagacttttgaat 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcatttcaaaagtaggcatgatgtatttttagaaactcaaattataaagacttttgaat 800

                                                                       
Query: 599 tctagtatgatttcattcacattcttgtggggtttccagggtgtgttgatatctattctg 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctagtatgatttcattcacattcttgtggggtttccagggtgtgttgatatctattctg 860

                          
Query: 659 tatgtaaaaactctt 673
           |||||||||||||||
Sbjct: 861 tatgtaaaaactctt 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1075
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1065
Effective search space:   706095
Effective search space used:   706095
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no322_p16.g1 MSMg01no322_p16.g1 CHROMAT_FILE:
MSMg01no322_p16.g1 PHD_FILE: MSMg01no322_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:03 2005
         (294 letters)



>mm_chr13_15850024_15850717
          Length = 694

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaaccctgtatttggaagcacagcaacaatgttcagccttgtcctgatgcccactggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttgaaccctgtatttggaagcacagcaacaatgttcagccttgtcctgatgcccactggc 435

                                                                       
Query: 61  atcctatataattcattctgtcctgattatcttgttaggtagatgagacaattggggctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atcctatataattcattctgtcctgattatcttgttaggtagatgagacaattggggctc 375

                                                                       
Query: 121 cacagctaaagtaagtggtaagtagaaaggagcccccctctccatgtccaggtaactcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cacagctaaagtaagtggtaagtagaaaggagcccccctctccatgtccaggtaactcag 315

                                                                       
Query: 181 gcacttgcctttgccctcagagaggggcagctttgtcatcaggttcctctgaccagttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gcacttgcctttgccctcagagaggggcagctttgtcatcaggttcctctgaccagttat 255

                                                                 
Query: 241 ggctaggacttcatttcctaaacaggatgaagctatgttctggcatattctgag 294
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 254 ggctaggacttcatttcctaagcaggatgaagctatgttctggcatattctgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)