Query= MSMg01no323_m01.b1 MSMg01no323_m01.b1 CHROMAT_FILE:
MSMg01no323_m01.b1 PHD_FILE: MSMg01no323_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:40 2005
(792 letters)
>mm_chr13_109796290_109797482
Length = 1193
Score = 1388 bits (718), Expect = 0.0
Identities = 776/798 (97%), Gaps = 7/798 (0%)
Strand = Plus / Plus
Query: 1 agaacactaatcttttttccattagttcttcttgaaaagctgctcctagatgtttgtcta 60
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 197 agaacactaatcttatttccattagttctttttgaaaagctgctcctagatgtttgtcta 256
Query: 61 aaagcactctattctctagacttcctttattatatttctgtggaggtcacagtgcagttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaagcactctattctctagacttcctttattatatttctgtggaggtcacagtgcagttg 316
Query: 121 gcccagaacctggaagccgatttctctgaagttttaagtctgacaatgatacacacatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gcccagaacctggaagccgatttctctgaagttttaagtctgacaatgatacacacatga 376
Query: 181 actaaagattttgctttcatcagcttgatttataggatttaaaccaattaactgtaggaa 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 actaaagatttcgctttcatcagcttgatttataggatttaaaccaattaactgtaggaa 436
Query: 241 aaagaatcaacatcttaaaatgatgtatatatctccatcctaaacaagaaaatatgagtt 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 437 aaagaatcaacatcttaaaatgatgtatgtatctccatcctaaacaagaaaatatgagtt 496
Query: 301 tattgtaaccagtcctaaggaagggctgtgttggttccgttcctgtgcaggcgctgagct 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tattgtaaccaatcctaaggaagggctgtgttggttccgttcctgtgcaggcgctgagct 556
Query: 361 gctgaagttgaacggggcttctgaccagcttgggcttgctgtctctgggttactgaccct 420
||||||| ||| |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 557 gctgaagctgagtggggcttctgaccagcttgggcttgctgtctctgggttgcagaccct 616
Query: 421 cttctagtacaaacagtcaatgtttcccatctgtctaacttgatattagtttatagttga 480
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cttctaatataaacagtcaatgtttcccatctgtctaacttgatattagtttatagttga 676
Query: 481 cat-----atgtacatacctctattatttttaattataatatgtaatatattaatatatg 535
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 677 cattttctatgtacatacctctattatttt-aattataatatgtaatatattaatatatg 735
Query: 536 taattgtaatatgtaatatatgtaattatctctattatccttgacgccttctggt-attc 594
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 736 taattgtaatatgcaatatatgtaattatctctattatccttgacgccttctggttattc 795
Query: 595 tgtaatatccacttagagtcaccattttttttccatttgacctcaatatcgacatcttat 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tgtaatatccacttagagtcaccattttttttccatttgacctcaatatcgacatcttat 855
Query: 655 gtgaacactattctagttctccactgcattactcaatatctaacacaggaatttaataaa 714
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 856 gtgaacactattctagttctccactgcattactcaatatctaacacaggcatttaaaaaa 915
Query: 715 taattattgagtagataagtatgtcagcactttaatcttagatgcagtatttggttcatg 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 taattattgagtagataagtatgtcagcactttaatcttagatgcagtatttggttcatg 975
Query: 775 aacacttctacttacaaa 792
||||||||||||||||||
Sbjct: 976 aacacttctacttacaaa 993
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 792
Length of database: 1193
Length adjustment: 10
Effective length of query: 782
Effective length of database: 1183
Effective search space: 925106
Effective search space used: 925106
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no323_m01.g1 MSMg01no323_m01.g1 CHROMAT_FILE:
MSMg01no323_m01.g1 PHD_FILE: MSMg01no323_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:40 2005
(387 letters)
>mm_chr13_109956205_109956992
Length = 788
Score = 603 bits (312), Expect = e-177
Identities = 336/344 (97%), Gaps = 1/344 (0%)
Strand = Plus / Minus
Query: 1 atgacctctatactgtgagctaggccatgaacatcatatacatggactagcatacctgca 60
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 344 atgacctctatactgtgagctaggccatgaataacatatacatggactagcatacctgca 285
Query: 61 catacgtgtccatatacacacagagagagacagacacagagagacagaaagagactgaat 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 catgcgtgtccatatacacacagagagagacagacacagagagacagaaagagactgaat 225
Query: 121 tt-aataaaatgtaaaagagcagtggtgttggaaagatggctcagtgctcttgcaaaaga 179
|| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 224 ttaaaaaaaatgtaaaagagcagtggtgttggaaagatggctcagtgctcttgcacaaga 165
Query: 180 cctgagcttggttcctagcattcacttggtagctcacaacctctcttaggtacctgcagt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 cctgagcttggttcctagcattcacttggtagctcacaacctctcttaggtacctgcagt 105
Query: 240 tctaggggattcccatgctctctgctggtccccgcaggcttctgcatgcacatgctatac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 tctaggggattcccatgctctctgctggtccccgcaggcttctgcatgcacatgctatac 45
Query: 300 aaaaactcaaaaaactcacacaggtaaactatatatatatatat 343
|||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 44 aaaaacgcaaaaaaatcacacaggtaaactatatatatatatat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 788
Length adjustment: 9
Effective length of query: 378
Effective length of database: 779
Effective search space: 294462
Effective search space used: 294462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
